Planaria EST Database

DrC_00810

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00810
         (585 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O14521|DHSD_HUMAN  Succinate dehydrogenase [ubiquinone] c...    68   1e-11
sp|Q95123|DHSD_BOVIN  Succinate dehydrogenase [ubiquinone] c...    67   4e-11
sp|Q6PCT8|DHSD_RAT  Succinate dehydrogenase [ubiquinone] cyt...    65   9e-11
sp|Q9CXV1|DHSD_MOUSE  Succinate dehydrogenase [ubiquinone] c...    65   2e-10
sp|Q9VCI5|DHSD_DROME  Putative succinate dehydrogenase [ubiq...    62   1e-09
sp|Q9P7X0|DHSD_SCHPO  Succinate dehydrogenase [ubiquinone] c...    56   6e-08
sp|P92507|DHSD_ASCSU  Succinate dehydrogenase [ubiquinone] c...    52   8e-07
sp|O62215|DHSD_CAEEL  Putative succinate dehydrogenase [ubiq...    52   1e-06
sp|Q7SGY6|DHSD_NEUCR  Succinate dehydrogenase [ubiquinone] c...    38   0.016
sp|Q750S6|DHSD_ASHGO  Succinate dehydrogenase [ubiquinone] c...    36   0.062

>sp|O14521|DHSD_HUMAN Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
           mitochondrial precursor (CybS) (Succinate-ubiquinone
           reductase membrane anchor subunit) (QPs3) (CII-4)
           (Succinate dehydrogenase complex subunit D)
           (Succinate-ubiquinone oxidoreductase cytochrome b small
           subunit)
          Length = 159

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
 Frame = +2

Query: 155 APTAGSGMRS-NVHWSIERIVAISMLPIYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVL 331
           +P+  SG ++ ++HW+ ER+V++ +L + P A++                H  WGL  V+
Sbjct: 52  SPSHHSGSKAASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVV 111

Query: 332 KDYVMERRYGPYLQPILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWSV 487
            DYV    +G  LQ   +     +SA+ FAG  YF Y+D+G  KAV  LW +
Sbjct: 112 TDYV----HGDALQKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL 159

>sp|Q95123|DHSD_BOVIN Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
           mitochondrial precursor (CybS) (Succinate-ubiquinone
           reductase membrane anchor subunit) (QPs3) (CII-4)
           (Succinate dehydrogenase complex subunit D)
          Length = 158

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
 Frame = +2

Query: 155 APTAGSGMRS-NVHWSIERIVAISMLPIYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVL 331
           +P+  SG ++ ++HW+ ER+V++ +L + P A++                H+ WG+  V+
Sbjct: 51  SPSHHSGSKAASLHWTGERVVSVLLLGLIPAAYLNPCSAMDYSLAATLTLHSHWGIGQVV 110

Query: 332 KDYVMERRYGPYLQPILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWSV 487
            DYV    +G  +Q   +    ++SA  FAG  YF Y+D+G  KAV  LW +
Sbjct: 111 TDYV----HGDAVQKAAKTGLLVLSAFTFAGLCYFNYHDVGICKAVAMLWKL 158

>sp|Q6PCT8|DHSD_RAT Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
           mitochondrial precursor (CybS) (Succinate-ubiquinone
           reductase membrane anchor subunit) (QPs3) (CII-4)
           (Succinate dehydrogenase complex subunit D)
           (Succinate-ubiquinone oxidoreductase cytochrome b small
           subunit)
          Length = 159

 Score = 65.5 bits (158), Expect = 9e-11
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
 Frame = +2

Query: 155 APTAGSGMRS-NVHWSIERIVAISMLPIYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVL 331
           +P+  SG ++ ++HW+ ER+V++ +L + P  ++                H+ WG+  V+
Sbjct: 52  SPSHQSGSKAASLHWTSERVVSVLLLGLIPAGYLNPCSVVDYSLAAALTLHSHWGIGQVV 111

Query: 332 KDYVMERRYGPYLQPILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWSV 487
            DYV    +G  LQ   +     +SA+ FAG  YF Y+D+G  +AV  LW +
Sbjct: 112 TDYV----HGDALQKATKAGLLAVSALTFAGLCYFNYHDVGICRAVAMLWKL 159

>sp|Q9CXV1|DHSD_MOUSE Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
           mitochondrial precursor (CybS) (Succinate-ubiquinone
           reductase membrane anchor subunit) (QPs3) (CII-4)
           (Succinate dehydrogenase complex subunit D)
           (Succinate-ubiquinone oxidoreductase cytochrome b small
           subunit)
          Length = 159

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
 Frame = +2

Query: 155 APTAGSGMRS-NVHWSIERIVAISMLPIYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVL 331
           +P+  SG ++ ++HW+ ER+V++ +L + P  ++                H+ WGL  V+
Sbjct: 52  SPSHHSGSKAASLHWTSERVVSVLLLGLIPAGYLNPCSVVDYSLAAALTLHSHWGLGQVV 111

Query: 332 KDYVMERRYGPYLQPILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWSV 487
            DYV    +G  L    R     +SA+ FAG  YF Y+D+G  +AV  LW +
Sbjct: 112 TDYV----HGDTLPKAARAGLLALSALTFAGLCYFNYHDVGICRAVAMLWKL 159

>sp|Q9VCI5|DHSD_DROME Putative succinate dehydrogenase [ubiquinone] cytochrome b small
           subunit, mitochondrial precursor (CybS)
           (Succinate-ubiquinone reductase membrane anchor subunit)
          Length = 182

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 30/132 (22%), Positives = 53/132 (40%)
 Frame = +2

Query: 92  VNNFPIRSIATTSVANTKLGTAPTAGSGMRSNVHWSIERIVAISMLPIYPTAWVIDXXXX 271
           V    +  I    V    +     A +G    + W++ERIV+  +L + P A++      
Sbjct: 43  VQPLAVAKIVAPVVREISVSAPRMASAGSSHTLLWTVERIVSAGLLAVIPAAFIAPSQVL 102

Query: 272 XXXXXXXXXXHAFWGLDGVLKDYVMERRYGPYLQPILRNLWKLISAIGFAGFLYFEYNDI 451
                     H  WG++ ++ DY+     G  L  +      +IS     G  YF  ND+
Sbjct: 103 DALMAISVVIHTHWGVEAMVVDYMRPSVVGNVLPKVAHIALIIISVATLGGLFYFIQNDV 162

Query: 452 GFVKAVKKLWSV 487
           G    +K+ W++
Sbjct: 163 GLANGIKRFWAI 174

>sp|Q9P7X0|DHSD_SCHPO Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
           mitochondrial precursor (CybS) (Succinate-ubiquinone
           reductase membrane anchor subunit)
          Length = 186

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
 Frame = +2

Query: 101 FPIRSIATTSVAN-------TKLGTAPTAG-----SGMRSNVHWSIERIVAISMLP--IY 238
           F ++S +TTSVA        T  GT   A      S +  + HW  ERI+AI+M+P  + 
Sbjct: 45  FAVKSFSTTSVAKIFPPPPQTIKGTVNDAAVFPHHSKLHGSYHWDFERIIAIAMVPQVMI 104

Query: 239 PTAWVIDXXXXXXXXXXXXXXHAFWGLDGVLKDYVMERRYGPYLQPILRNLWKLISAIGF 418
           P                    HA  G +  + DY   RR+   L P++  + +  + +  
Sbjct: 105 PLFTGTSHPLMDAALACTLITHAHLGFESCVIDYFPARRFKK-LSPLMHWILRGCTVLTL 163

Query: 419 AGFLYFEYNDIGFVKAVKKLW 481
            G   F  NDIG  + +KKLW
Sbjct: 164 IGVYEFNTNDIGLTEGIKKLW 184

>sp|P92507|DHSD_ASCSU Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
           mitochondrial precursor (CybS) (Succinate-ubiquinone
           reductase membrane anchor subunit) (Cytochrome b558
           small subunit)
          Length = 156

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 29/98 (29%), Positives = 45/98 (45%)
 Frame = +2

Query: 194 WSIERIVAISMLPIYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVLKDYVMERRYGPYLQ 373
           + IER  A +M+P+ P A+ I               H  WG+ GV+ DY      G  L 
Sbjct: 59  FKIERYFAAAMVPLIPAAYFIHGREMDLCLALALTLHVHWGVWGVVNDYGRPFVLGDTLA 118

Query: 374 PILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWSV 487
             +R    + +A   AG LYF  +D+G  +A + +W +
Sbjct: 119 AAVRVGAYIFTACLLAGLLYFNEHDVGLTRAFEMVWEL 156

>sp|O62215|DHSD_CAEEL Putative succinate dehydrogenase [ubiquinone] cytochrome b small
           subunit, mitochondrial precursor (CybS)
           (Succinate-ubiquinone reductase membrane anchor subunit)
          Length = 145

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 28/101 (27%), Positives = 46/101 (45%)
 Frame = +2

Query: 185 NVHWSIERIVAISMLPIYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVLKDYVMERRYGP 364
           ++H+ +ER+ A+ MLPI P ++ I               H  WG+ GV+ DY      G 
Sbjct: 45  SMHFKLERLWAVGMLPILPASYFIHGPVMDAVLTVALTLHIHWGIHGVVYDYARPYVIGE 104

Query: 365 YLQPILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWSV 487
                      LI+ +     L+F  ND+G  KA + ++S+
Sbjct: 105 AAAKAAHVGVYLITGLLLGALLHFNTNDVGITKAFELVFSL 145

>sp|Q7SGY6|DHSD_NEUCR Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
           mitochondrial precursor (CybS) (Succinate-ubiquinone
           reductase membrane anchor subunit)
          Length = 166

 Score = 38.1 bits (87), Expect = 0.016
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
 Frame = +2

Query: 170 SGMRSNVHWSIERIVAISMLP--IYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVLKDYV 343
           S    + HW+ +R+VA  ++P  + P A                  H+  G   ++ DYV
Sbjct: 60  SPSHGSYHWTFDRVVAAGLIPLTVAPFAAGSLNPTMDAVLAATILIHSHTGFGNIIVDYV 119

Query: 344 MERRYGPYLQPILRNLWKLISAIGFAGF-LY-FEYNDIGFVKAVKKLW 481
             +R  P  + +    W L +A    G  LY FE  D+G  + +K++W
Sbjct: 120 PSKRV-PKARKVF--TWGLNAATVLVGLALYEFETTDVGLTETIKRVW 164

>sp|Q750S6|DHSD_ASHGO Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
           mitochondrial precursor (CybS) (Succinate-ubiquinone
           reductase membrane anchor subunit)
          Length = 171

 Score = 36.2 bits (82), Expect = 0.062
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
 Frame = +2

Query: 176 MRSNVHWSIERIVAISMLPIYPTAWVID---XXXXXXXXXXXXXXHAFWGLDGVLKDYVM 346
           M  ++HW+IER  A++ +P+     V                   H + G    + DY+ 
Sbjct: 58  MHGSLHWNIERAFAVAAVPLVGLPLVAGSGVSTLMDSLLASVMLGHCYIGFQACIIDYIP 117

Query: 347 ERRYGPYLQPILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWS 484
           +R YG + Q  +  L    S +   G    E    G   AV  +WS
Sbjct: 118 QRVYGKFHQYAM-YLLAFGSLLSGVGIYKMESEGYGICGAVAAVWS 162

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,331,319
Number of Sequences: 369166
Number of extensions: 1402204
Number of successful extensions: 3000
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2987
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00810

  1. Dr_sW_020_M10
  2. Dr_sW_013_B20