Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_M10
(585 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14521|DHSD_HUMAN Succinate dehydrogenase [ubiquinone] c... 68 1e-11
sp|Q95123|DHSD_BOVIN Succinate dehydrogenase [ubiquinone] c... 67 4e-11
sp|Q6PCT8|DHSD_RAT Succinate dehydrogenase [ubiquinone] cyt... 65 9e-11
sp|Q9CXV1|DHSD_MOUSE Succinate dehydrogenase [ubiquinone] c... 65 2e-10
sp|Q9VCI5|DHSD_DROME Putative succinate dehydrogenase [ubiq... 62 1e-09
sp|Q9P7X0|DHSD_SCHPO Succinate dehydrogenase [ubiquinone] c... 56 6e-08
sp|P92507|DHSD_ASCSU Succinate dehydrogenase [ubiquinone] c... 52 8e-07
sp|O62215|DHSD_CAEEL Putative succinate dehydrogenase [ubiq... 52 1e-06
sp|Q7SGY6|DHSD_NEUCR Succinate dehydrogenase [ubiquinone] c... 38 0.016
sp|Q750S6|DHSD_ASHGO Succinate dehydrogenase [ubiquinone] c... 36 0.062
>sp|O14521|DHSD_HUMAN Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial precursor (CybS) (Succinate-ubiquinone
reductase membrane anchor subunit) (QPs3) (CII-4)
(Succinate dehydrogenase complex subunit D)
(Succinate-ubiquinone oxidoreductase cytochrome b small
subunit)
Length = 159
Score = 68.2 bits (165), Expect = 1e-11
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Frame = +2
Query: 155 APTAGSGMRS-NVHWSIERIVAISMLPIYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVL 331
+P+ SG ++ ++HW+ ER+V++ +L + P A++ H WGL V+
Sbjct: 52 SPSHHSGSKAASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVV 111
Query: 332 KDYVMERRYGPYLQPILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWSV 487
DYV +G LQ + +SA+ FAG YF Y+D+G KAV LW +
Sbjct: 112 TDYV----HGDALQKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL 159
>sp|Q95123|DHSD_BOVIN Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial precursor (CybS) (Succinate-ubiquinone
reductase membrane anchor subunit) (QPs3) (CII-4)
(Succinate dehydrogenase complex subunit D)
Length = 158
Score = 66.6 bits (161), Expect = 4e-11
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Frame = +2
Query: 155 APTAGSGMRS-NVHWSIERIVAISMLPIYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVL 331
+P+ SG ++ ++HW+ ER+V++ +L + P A++ H+ WG+ V+
Sbjct: 51 SPSHHSGSKAASLHWTGERVVSVLLLGLIPAAYLNPCSAMDYSLAATLTLHSHWGIGQVV 110
Query: 332 KDYVMERRYGPYLQPILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWSV 487
DYV +G +Q + ++SA FAG YF Y+D+G KAV LW +
Sbjct: 111 TDYV----HGDAVQKAAKTGLLVLSAFTFAGLCYFNYHDVGICKAVAMLWKL 158
>sp|Q6PCT8|DHSD_RAT Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial precursor (CybS) (Succinate-ubiquinone
reductase membrane anchor subunit) (QPs3) (CII-4)
(Succinate dehydrogenase complex subunit D)
(Succinate-ubiquinone oxidoreductase cytochrome b small
subunit)
Length = 159
Score = 65.5 bits (158), Expect = 9e-11
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Frame = +2
Query: 155 APTAGSGMRS-NVHWSIERIVAISMLPIYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVL 331
+P+ SG ++ ++HW+ ER+V++ +L + P ++ H+ WG+ V+
Sbjct: 52 SPSHQSGSKAASLHWTSERVVSVLLLGLIPAGYLNPCSVVDYSLAAALTLHSHWGIGQVV 111
Query: 332 KDYVMERRYGPYLQPILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWSV 487
DYV +G LQ + +SA+ FAG YF Y+D+G +AV LW +
Sbjct: 112 TDYV----HGDALQKATKAGLLAVSALTFAGLCYFNYHDVGICRAVAMLWKL 159
>sp|Q9CXV1|DHSD_MOUSE Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial precursor (CybS) (Succinate-ubiquinone
reductase membrane anchor subunit) (QPs3) (CII-4)
(Succinate dehydrogenase complex subunit D)
(Succinate-ubiquinone oxidoreductase cytochrome b small
subunit)
Length = 159
Score = 64.7 bits (156), Expect = 2e-10
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Frame = +2
Query: 155 APTAGSGMRS-NVHWSIERIVAISMLPIYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVL 331
+P+ SG ++ ++HW+ ER+V++ +L + P ++ H+ WGL V+
Sbjct: 52 SPSHHSGSKAASLHWTSERVVSVLLLGLIPAGYLNPCSVVDYSLAAALTLHSHWGLGQVV 111
Query: 332 KDYVMERRYGPYLQPILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWSV 487
DYV +G L R +SA+ FAG YF Y+D+G +AV LW +
Sbjct: 112 TDYV----HGDTLPKAARAGLLALSALTFAGLCYFNYHDVGICRAVAMLWKL 159
>sp|Q9VCI5|DHSD_DROME Putative succinate dehydrogenase [ubiquinone] cytochrome b small
subunit, mitochondrial precursor (CybS)
(Succinate-ubiquinone reductase membrane anchor subunit)
Length = 182
Score = 61.6 bits (148), Expect = 1e-09
Identities = 30/132 (22%), Positives = 53/132 (40%)
Frame = +2
Query: 92 VNNFPIRSIATTSVANTKLGTAPTAGSGMRSNVHWSIERIVAISMLPIYPTAWVIDXXXX 271
V + I V + A +G + W++ERIV+ +L + P A++
Sbjct: 43 VQPLAVAKIVAPVVREISVSAPRMASAGSSHTLLWTVERIVSAGLLAVIPAAFIAPSQVL 102
Query: 272 XXXXXXXXXXHAFWGLDGVLKDYVMERRYGPYLQPILRNLWKLISAIGFAGFLYFEYNDI 451
H WG++ ++ DY+ G L + +IS G YF ND+
Sbjct: 103 DALMAISVVIHTHWGVEAMVVDYMRPSVVGNVLPKVAHIALIIISVATLGGLFYFIQNDV 162
Query: 452 GFVKAVKKLWSV 487
G +K+ W++
Sbjct: 163 GLANGIKRFWAI 174
>sp|Q9P7X0|DHSD_SCHPO Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial precursor (CybS) (Succinate-ubiquinone
reductase membrane anchor subunit)
Length = 186
Score = 56.2 bits (134), Expect = 6e-08
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Frame = +2
Query: 101 FPIRSIATTSVAN-------TKLGTAPTAG-----SGMRSNVHWSIERIVAISMLP--IY 238
F ++S +TTSVA T GT A S + + HW ERI+AI+M+P +
Sbjct: 45 FAVKSFSTTSVAKIFPPPPQTIKGTVNDAAVFPHHSKLHGSYHWDFERIIAIAMVPQVMI 104
Query: 239 PTAWVIDXXXXXXXXXXXXXXHAFWGLDGVLKDYVMERRYGPYLQPILRNLWKLISAIGF 418
P HA G + + DY RR+ L P++ + + + +
Sbjct: 105 PLFTGTSHPLMDAALACTLITHAHLGFESCVIDYFPARRFKK-LSPLMHWILRGCTVLTL 163
Query: 419 AGFLYFEYNDIGFVKAVKKLW 481
G F NDIG + +KKLW
Sbjct: 164 IGVYEFNTNDIGLTEGIKKLW 184
>sp|P92507|DHSD_ASCSU Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial precursor (CybS) (Succinate-ubiquinone
reductase membrane anchor subunit) (Cytochrome b558
small subunit)
Length = 156
Score = 52.4 bits (124), Expect = 8e-07
Identities = 29/98 (29%), Positives = 45/98 (45%)
Frame = +2
Query: 194 WSIERIVAISMLPIYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVLKDYVMERRYGPYLQ 373
+ IER A +M+P+ P A+ I H WG+ GV+ DY G L
Sbjct: 59 FKIERYFAAAMVPLIPAAYFIHGREMDLCLALALTLHVHWGVWGVVNDYGRPFVLGDTLA 118
Query: 374 PILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWSV 487
+R + +A AG LYF +D+G +A + +W +
Sbjct: 119 AAVRVGAYIFTACLLAGLLYFNEHDVGLTRAFEMVWEL 156
>sp|O62215|DHSD_CAEEL Putative succinate dehydrogenase [ubiquinone] cytochrome b small
subunit, mitochondrial precursor (CybS)
(Succinate-ubiquinone reductase membrane anchor subunit)
Length = 145
Score = 51.6 bits (122), Expect = 1e-06
Identities = 28/101 (27%), Positives = 46/101 (45%)
Frame = +2
Query: 185 NVHWSIERIVAISMLPIYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVLKDYVMERRYGP 364
++H+ +ER+ A+ MLPI P ++ I H WG+ GV+ DY G
Sbjct: 45 SMHFKLERLWAVGMLPILPASYFIHGPVMDAVLTVALTLHIHWGIHGVVYDYARPYVIGE 104
Query: 365 YLQPILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWSV 487
LI+ + L+F ND+G KA + ++S+
Sbjct: 105 AAAKAAHVGVYLITGLLLGALLHFNTNDVGITKAFELVFSL 145
>sp|Q7SGY6|DHSD_NEUCR Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial precursor (CybS) (Succinate-ubiquinone
reductase membrane anchor subunit)
Length = 166
Score = 38.1 bits (87), Expect = 0.016
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Frame = +2
Query: 170 SGMRSNVHWSIERIVAISMLP--IYPTAWVIDXXXXXXXXXXXXXXHAFWGLDGVLKDYV 343
S + HW+ +R+VA ++P + P A H+ G ++ DYV
Sbjct: 60 SPSHGSYHWTFDRVVAAGLIPLTVAPFAAGSLNPTMDAVLAATILIHSHTGFGNIIVDYV 119
Query: 344 MERRYGPYLQPILRNLWKLISAIGFAGF-LY-FEYNDIGFVKAVKKLW 481
+R P + + W L +A G LY FE D+G + +K++W
Sbjct: 120 PSKRV-PKARKVF--TWGLNAATVLVGLALYEFETTDVGLTETIKRVW 164
>sp|Q750S6|DHSD_ASHGO Succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial precursor (CybS) (Succinate-ubiquinone
reductase membrane anchor subunit)
Length = 171
Score = 36.2 bits (82), Expect = 0.062
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Frame = +2
Query: 176 MRSNVHWSIERIVAISMLPIYPTAWVID---XXXXXXXXXXXXXXHAFWGLDGVLKDYVM 346
M ++HW+IER A++ +P+ V H + G + DY+
Sbjct: 58 MHGSLHWNIERAFAVAAVPLVGLPLVAGSGVSTLMDSLLASVMLGHCYIGFQACIIDYIP 117
Query: 347 ERRYGPYLQPILRNLWKLISAIGFAGFLYFEYNDIGFVKAVKKLWS 484
+R YG + Q + L S + G E G AV +WS
Sbjct: 118 QRVYGKFHQYAM-YLLAFGSLLSGVGIYKMESEGYGICGAVAAVWS 162
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,331,319
Number of Sequences: 369166
Number of extensions: 1402204
Number of successful extensions: 3000
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2987
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)