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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00782
         (800 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4X1D7|CWC25_ASPFU  Pre-mRNA splicing factor cwc25              45   3e-04
sp|Q9QX47|SON_MOUSE  SON protein                                   40   0.006
sp|Q5T200|K0853_HUMAN  Protein KIAA0853                            40   0.006
sp|O01159|RSP7_CAEEL  Probable splicing factor, arginine/ser...    39   0.017
sp|P39936|IF4F2_YEAST  Eukaryotic initiation factor 4F subun...    39   0.022
sp|Q61136|PRP4B_MOUSE  Serine/threonine-protein kinase PRP4 ...    39   0.022
sp|Q99MR6|ARS2_MOUSE  Arsenite-resistance protein 2                39   0.022
sp|P25555|GBP2_YEAST  Single-strand telomeric DNA-binding pr...    39   0.022
sp|P18583|SON_HUMAN  SON protein (SON3) (Negative regulatory...    39   0.022
sp|Q9BXP5|ARS2_HUMAN  Arsenite-resistance protein 2                39   0.022

>sp|Q4X1D7|CWC25_ASPFU Pre-mRNA splicing factor cwc25
          Length = 447

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 60/228 (26%), Positives = 85/228 (37%), Gaps = 19/228 (8%)
 Frame = +3

Query: 84  RRSPADYRKEISRNRAMSPPRKEYSMRDLSPRVREISPRMRDVEPRIRDVEPRIRDMDPR 263
           RR   D  ++ SR+R  S  R  +   D     R  S R R   P   D   R R  D  
Sbjct: 177 RRDRGD--RDRSRDRDRSHRRSRHEDEDAHRSHRHRSHRHRSRSPLSPDRSDRKRGDDRD 234

Query: 264 FRDYAPR--SRNFENRSRDGRRDYSPNA--------RDRHFSPVRYQHDRYEYSPPRSRN 413
           +RD   R   R  E+R  D R D              DRH S  + + DRY++S  R   
Sbjct: 235 YRDERDRRDDRRDEHRGHDRRDDRRSERDRRADRGDEDRHSSRYKDRDDRYDHSTRRRSY 294

Query: 414 YERDNFP-------ERRRNDVRPFXXXXXXXXXXXXXXXFRPRGGRFNSQRGNTRGRDNL 572
            +R   P       +RRR + R                  RP   R N ++ N   R   
Sbjct: 295 ADRSPSPRRGNHYYDRRRTEDR------SDGYHRDSRNHDRPEFYRGNDRKVNKEPR--- 345

Query: 573 NRFDSNQRNNYNRPRDESSMRRGHINDNPKRK--VEQVPNSGIPPQKK 710
              DSN R   +  RDE +  +  + +  ++K   E + N+    QK+
Sbjct: 346 ---DSNLRERSSNTRDEVAGNKEKVLEEERKKKLAEMMSNADELEQKR 390

>sp|Q9QX47|SON_MOUSE SON protein
          Length = 2404

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
 Frame = +3

Query: 120  RNRAMSPPRKEYSMR-------DLSPRVREISPRMRDVEPRIRDVEPRIRDMDPRFRDYA 278
            R+R+ +P R+  S+         +SP  R  +P  R   P  R   P  R   P  R   
Sbjct: 1913 RSRSHTPSRRRRSISVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRT 1972

Query: 279  PRSRNFENRSRDGRRDYS--PNARDRHFSPVRYQHDRYEYSPPRSRNYERDNFPER 440
            P SR   +RS   RR +S  P    R  +P+R +  R      RSR+ ER   P+R
Sbjct: 1973 P-SRRRRSRSAVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSERGRSPKR 2027

>sp|Q5T200|K0853_HUMAN Protein KIAA0853
          Length = 1668

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 64/231 (27%), Positives = 90/231 (38%), Gaps = 17/231 (7%)
 Frame = +3

Query: 81   MRRSPADYRKEI--SRNRAMSPPRKEYSMRDLSPRVREISPRMRDVEPRIRDVEPRIRDM 254
            +RRS + Y      S  R  SPPR    MR+      E + +  D     R+     RD 
Sbjct: 367  LRRSASPYPSHSLSSPQRKQSPPRHRSPMREKGRHDHERTSQSHDRRHERREDTRGKRDR 426

Query: 255  DPRFRDYAPRSRNFENRSRDGRRDYSP-NARDRHFSPVRYQHDRYEYSPPRS-------R 410
            +   R+     ++ ++ SRD R D  P + RDR     R   DR E    R        R
Sbjct: 427  EKDSREEREYEQD-QSSSRDHRDDREPRDGRDRR--DARDTRDRRELRDSRDMRDSREMR 483

Query: 411  NYERDNFPERRRNDVRPFXXXXXXXXXXXXXXXFRPRGGRFNSQRGNT-------RGRDN 569
            +Y RD    R   D R                 +R R GR   ++ +T        GR++
Sbjct: 484  DYSRDTKESRDPRDSR----------STRDAHDYRDREGRDTHRKEDTYPEESRSYGRNH 533

Query: 570  LNRFDSNQRNNYNRPRDESSMRRGHINDNPKRKVEQVPNSGIPPQKKSRDS 722
            L R +S++    N  R+ES  R    ND   R   +VP     P+K SR S
Sbjct: 534  L-REESSRTEIRNESRNES--RSEIRNDRMGRSRGRVPEL---PEKGSRGS 578

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 45/221 (20%), Positives = 72/221 (32%)
 Frame = +3

Query: 99   DYRKEISRNRAMSPPRKEYSMRDLSPRVREISPRMRDVEPRIRDVEPRIRDMDPRFRDYA 278
            D R+E  R   +   R E +      R R+          R R+ E        R R+  
Sbjct: 657  DERREERRVDRVDDRRDERARERDRERERDRERERERERERDREREKERELERERARERE 716

Query: 279  PRSRNFENRSRDGRRDYSPNARDRHFSPVRYQHDRYEYSPPRSRNYERDNFPERRRNDVR 458
                   +R RD  RD+              + +R      R R  ER+   ER R    
Sbjct: 717  REREKERDRERDRDRDHDRERERERERDREKEREREREERERERERERERERERERE--- 773

Query: 459  PFXXXXXXXXXXXXXXXFRPRGGRFNSQRGNTRGRDNLNRFDSNQRNNYNRPRDESSMRR 638
                              R R    + +R   R  ++ ++   ++R      R++ + R 
Sbjct: 774  ------------------RERARERDKERERQRDWEDKDKGRDDRREKREEIREDRNPRD 815

Query: 639  GHINDNPKRKVEQVPNSGIPPQKKSRDSSFETSP*ELLFNS 761
            GH     K++     N G P  ++S     E SP    +NS
Sbjct: 816  GHDERKSKKRYR---NEGSPSPRQSPKRRREHSPDSDAYNS 853

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 37/121 (30%), Positives = 42/121 (34%), Gaps = 10/121 (8%)
 Frame = +3

Query: 126 RAMSPPRKEYSMRDLSPRVREISPRMRDVEPRIRDVEPRIRDMDPRF-------RDYAPR 284
           R+  P R  Y  RD   + R+ S   R  E   RD   R RD  P          D   R
Sbjct: 599 RSSYPERDRYPERDNRDQARDSSFERRHGERDRRD--NRERDQRPSSPIRHQGRNDELER 656

Query: 285 SRNFENRSRD---GRRDYSPNARDRHFSPVRYQHDRYEYSPPRSRNYERDNFPERRRNDV 455
               E R  D    RRD     RDR     R +    E    R R  ER+   ER R   
Sbjct: 657 DERREERRVDRVDDRRDERARERDRERERDRERERERERERDREREKERELERERARERE 716

Query: 456 R 458
           R
Sbjct: 717 R 717

>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 (p54)
          Length = 452

 Score = 38.9 bits (89), Expect = 0.017
 Identities = 49/211 (23%), Positives = 73/211 (34%), Gaps = 13/211 (6%)
 Frame = +3

Query: 147 KEYSMRDLSPRVREISPRMRDVEPRIRDVEPRIR-----DMDPRFRDYAPRSRNFENRSR 311
           KE  ++    RV  I P+ +  E  + ++E  IR     D   R R  +PR R   +  R
Sbjct: 229 KERPLKIQHSRVAIIKPQAKTDEQALGEIEEAIRMGRNGDDRDRRRSRSPRRRRSPSPRR 288

Query: 312 DGRRDYSPNARDRHFSPVRYQHDRYEYSPPRSRNYERDNFPERRRNDVRPFXXXXXXXXX 491
             RRD     RDR         DR      RSR+ +RD   +R+R+  R           
Sbjct: 289 --RRDSRDRDRDR-------DRDRRRSRDRRSRSRDRDRDRDRKRSRSRDRKRRSRSRDN 339

Query: 492 XXXXXXFRPRGGRFNSQRGNTRGRDNLNRFDSNQRNNYNRPRDESSMRRGHINDNPKRKV 671
                       R    +   R R+       +++ +  R R  S  +R    D    K 
Sbjct: 340 KDRDRKRSRSRDRRRRSKSRDRKRERSRSRSKDRKRDKKRSRSRSPEKRRDKEDRKTEKK 399

Query: 672 EQVPNSGI--------PPQKKSRDSSFETSP 740
           E    S +          +K S D  +E  P
Sbjct: 400 ENENESSLREKLLEKKAARKDSSDDEWEEKP 430

>sp|P39936|IF4F2_YEAST Eukaryotic initiation factor 4F subunit p130 (eIF4F p130) (eIF-4F
            p130) (mRNA cap-binding protein complex subunit p130)
          Length = 914

 Score = 38.5 bits (88), Expect = 0.022
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
 Frame = +3

Query: 534  NSQRGNTR----GRDNLNRFDSNQRNNYNRPRDE-SSMRRGHINDNPK--RKVEQV 680
            NSQR N+R     + N NR+ SN+RN  N  RD  +S + G   +N +  RKVE+V
Sbjct: 839  NSQRSNSRFNNHNQSNSNRYSSNRRNMQNTQRDSFASTKTGSFRNNQRNARKVEEV 894

>sp|Q61136|PRP4B_MOUSE Serine/threonine-protein kinase PRP4 homolog (PRP4 pre-mRNA
           processing factor 4 homolog) (Pre-mRNA protein kinase)
          Length = 1007

 Score = 38.5 bits (88), Expect = 0.022
 Identities = 49/203 (24%), Positives = 74/203 (36%), Gaps = 17/203 (8%)
 Frame = +3

Query: 87  RSPADYRKEISRNRAMSPPRK------EYSMRDLSPRVREISPRMRDVEPRIRDVE-PRI 245
           +SP D R +    R+ S  RK      +   + +    ++ S    +  P  R    P+ 
Sbjct: 293 KSPVDLRDKSKDRRSRSKERKSKRSEIDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKR 352

Query: 246 RDMDPRFRDYAPRSRNFENRSRDGRRDYSPN--------ARDRHFSPVRYQHDRYEYSPP 401
           R + P+ RD + RSR+     R  ++  SP+        A+ R     R + +R   S P
Sbjct: 353 RSLSPKLRDKSRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSP 412

Query: 402 RSRNYERDNFPER--RRNDVRPFXXXXXXXXXXXXXXXFRPRGGRFNSQRGNTRGRDNLN 575
           R+R   RD+   R  R  D  P                 R R     S+    R R    
Sbjct: 413 RTR--PRDDILGRCERSKDASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRR 470

Query: 576 RFDSNQRNNYNRPRDESSMRRGH 644
           R     R + +R R  S  R GH
Sbjct: 471 R--DRSRRSKSRLRRRSRSRGGH 491

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 36/98 (36%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
 Frame = +3

Query: 87  RSPADYRKEISRNRAMSP---PRKEYSMR-----DLSP-------RVREISP-RMRDVEP 218
           RS    R+E  R R  SP   PR +   R     D SP       R R  SP R R   P
Sbjct: 395 RSLERKRREPERRRLSSPRTRPRDDILGRCERSKDASPINRWSPTRRRSRSPIRRRSRSP 454

Query: 219 RIRDVEPRIRDMDPRFRDYAPRSRN---FENRSRDGRR 323
             R   PR R   PR RD + RS++     +RSR G R
Sbjct: 455 LRRSRSPRRRSRSPRRRDRSRRSKSRLRRRSRSRGGHR 492

>sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2
          Length = 875

 Score = 38.5 bits (88), Expect = 0.022
 Identities = 33/79 (41%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +3

Query: 186 EISPRMRDVEPRIRDVEPRIRDMDPRFR--DYAPRS--RNFENRSRDGRRDYSPNARDRH 353
           E   R RD   R R    R R+ D R R  D+  R   R  E RSR   RDY  N R+R 
Sbjct: 7   EYDRRRRDKFRRERSDYDRSRERDERRRGDDWNDREWDRGRERRSRGEYRDYDRNRRER- 65

Query: 354 FSPVRYQHDRYEYSPPRSR 410
           FSP      R+E SPP+ R
Sbjct: 66  FSP-----PRHELSPPQKR 79

>sp|P25555|GBP2_YEAST Single-strand telomeric DNA-binding protein GBP2 (G-strand binding
           protein 2) (RAP1 localization factor 6)
          Length = 427

 Score = 38.5 bits (88), Expect = 0.022
 Identities = 44/134 (32%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
 Frame = +3

Query: 231 VEPRIRDMDPRFRDYAPRSRNFENRSRDGRRDYSPNARDRHFSPVRYQHDRYEYSPPRSR 410
           V  R+ D   R+ DY   S N  N SR  RRD     R   F      +DRY+ S   SR
Sbjct: 19  VRRRLSDDRDRYDDYNDSSSNNGNGSRRQRRD-----RGSRF------NDRYDQSYGGSR 67

Query: 411 NYERDNFPERR----RNDVRPFXXXXXXXXXXXXXXXFRPRGGRFNSQRGNTRG----RD 566
            ++  N+P RR    R   R F                  RGGR    RG T G    RD
Sbjct: 68  YHDDRNWPPRRGGRGRGGSRSF------------------RGGR-GGGRGRTLGPIVERD 108

Query: 567 NLNRFDSNQRNNYN 608
              +FD+ +RN  N
Sbjct: 109 LERQFDATKRNFEN 122

>sp|P18583|SON_HUMAN SON protein (SON3) (Negative regulatory element-binding protein)
            (NRE-binding protein) (DBP-5) (Bax antagonist selected in
            saccharomyces 1) (BASS1)
          Length = 2426

 Score = 38.5 bits (88), Expect = 0.022
 Identities = 47/142 (33%), Positives = 56/142 (39%), Gaps = 23/142 (16%)
 Frame = +3

Query: 84   RRSPADYRKEIS--------RNRAMSPPRKEYSMRDLSPRVREISPRMRDVEPRIRDVEP 239
            R S  D RK +         R+R+ +P R+  S      R   ISP  R   P  R   P
Sbjct: 1908 RSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTP 1967

Query: 240  RIRDMDPRFRDYAP--RSRNFENRSR--DGRRDYSPNARDRHFS--PVRYQHDR------ 383
              R   P  R   P  RSR    RSR    RR      R R FS  PVR +  R      
Sbjct: 1968 SRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRR 2027

Query: 384  YEYSP---PRSRNYERDNFPER 440
            +  SP    RSR+ ER   P+R
Sbjct: 2028 FSRSPIRRKRSRSSERGRSPKR 2049

>sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2
          Length = 876

 Score = 38.5 bits (88), Expect = 0.022
 Identities = 33/79 (41%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +3

Query: 186 EISPRMRDVEPRIRDVEPRIRDMDPRFR--DYAPRS--RNFENRSRDGRRDYSPNARDRH 353
           E   R RD   R R    R R+ D R R  D+  R   R  E RSR   RDY  N R+R 
Sbjct: 7   EYDRRRRDKFRRERSDYDRSRERDERRRGDDWNDREWDRGRERRSRGEYRDYDRNRRER- 65

Query: 354 FSPVRYQHDRYEYSPPRSR 410
           FSP      R+E SPP+ R
Sbjct: 66  FSP-----PRHELSPPQKR 79

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,828,289
Number of Sequences: 369166
Number of extensions: 1517426
Number of successful extensions: 4856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4673
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_020_D12
2. Dr_sW_023_B01
3. Dr_sW_007_B19