Planaria EST Database

DrC_00761

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00761
         (843 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O55101|SNG2_MOUSE  Synaptogyrin-2 (Cellugyrin)                  42   0.002
sp|O54980|SNG2_RAT  Synaptogyrin-2 (Cellugyrin)                    40   0.008
sp|O95473|SNG4_HUMAN  Synaptogyrin-4                               39   0.014
sp|O43760|SNG2_HUMAN  Synaptogyrin-2 (Cellugyrin)                  39   0.018
sp|Q9Z1L2|SNG4_MOUSE  Synaptogyrin-4                               38   0.040
sp|O43759|SNG1_HUMAN  Synaptogyrin-1                               37   0.089
sp|O55100|SNG1_MOUSE  Synaptogyrin-1                               35   0.26 
sp|Q62876|SNG1_RAT  Synaptogyrin-1 (p29)                           35   0.26 
sp|P16537|SPC3_STRPU  SPEC3 protein                                33   0.99 
sp|P87293|YDN1_SCHPO  Hypothetical protein C16A10.01 in chro...    31   3.7  

>sp|O55101|SNG2_MOUSE Synaptogyrin-2 (Cellugyrin)
          Length = 224

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = +1

Query: 169 FCVFNMQTPSCDYAQSVGWISIIFGIYVIILE-IFSQSINLKFLKISFIFEFLINVILSI 345
           +CVFN    +C Y  ++G ++ +   + ++++  FSQ  N    K   I + L + + + 
Sbjct: 58  YCVFNQNEDACRYGSAIGVLAFLASAFFLVVDAFFSQISNATDRKYLVIGDLLFSALWTF 117

Query: 346 MWLAAFIDLNVKWTNVPNMPESWVLANARAVIS 444
           +W   F  L  +W             +ARA I+
Sbjct: 118 LWFVGFCFLTNQWAATKPQDVRVGADSARAAIT 150

>sp|O54980|SNG2_RAT Synaptogyrin-2 (Cellugyrin)
          Length = 224

 Score = 40.0 bits (92), Expect = 0.008
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 172 CVFNMQTPSCDYAQSVGWISIIFGIYVIILE-IFSQSINLKFLKISFIFEFLINVILSIM 348
           CVFN    +C Y  ++G ++ +   + ++++  FSQ  N    K   I + L + + + +
Sbjct: 59  CVFNRNEDACRYGSAIGVLAFLASAFFLVVDAFFSQISNATDRKYLVIGDLLFSALWTFL 118

Query: 349 WLAAFIDLNVKW 384
           W   F  L  +W
Sbjct: 119 WFVGFCFLTNQW 130

>sp|O95473|SNG4_HUMAN Synaptogyrin-4
          Length = 234

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 19/89 (21%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
 Frame = +1

Query: 172 CVFNMQTPSCDYAQSVGWISIIFGIYVIILEIFSQSINLKFLKISF-IFEFLINVILSIM 348
           C+ N  + +C +A   G+++ +  +  ++L+     I     K +F + +F++ V+ +++
Sbjct: 57  CILNSNSVACSFAVGAGFLAFLSCLAFLVLDTQETRIAGTRFKTAFQLLDFILAVLWAVV 116

Query: 349 WLAAFIDLNVKWTNVPNMPESWVLANARA 435
           W   F  L  +W + P  P+ ++L ++ A
Sbjct: 117 WFMGFCFLANQWQHSP--PKEFLLGSSSA 143

>sp|O43760|SNG2_HUMAN Synaptogyrin-2 (Cellugyrin)
          Length = 224

 Score = 38.9 bits (89), Expect = 0.018
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +1

Query: 169 FCVFNMQTPSCDYAQSVGWISIIFGIYVIILE-IFSQSINLKFLKISFIFEFLINVILSI 345
           +CVFN    +C Y  ++G ++ +   + ++++  F Q  N    K   I + L + + + 
Sbjct: 58  YCVFNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTF 117

Query: 346 MWLAAFIDLNVKW 384
           +W   F  L  +W
Sbjct: 118 LWFVGFCFLTNQW 130

>sp|Q9Z1L2|SNG4_MOUSE Synaptogyrin-4
          Length = 233

 Score = 37.7 bits (86), Expect = 0.040
 Identities = 20/89 (22%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
 Frame = +1

Query: 172 CVFNMQTPSCDYAQSVGWISIIFGIYVIILEIFSQSINLKFLKISF-IFEFLINVILSIM 348
           CV N    +C +A   G++S +  +  + ++ + + +     KI+F + +F++ V+ + +
Sbjct: 57  CVLNSNHMACSFAVGAGFLSFLSCLVFLAIDAYERRLVGTRFKIAFQLLDFILAVLWAGV 116

Query: 349 WLAAFIDLNVKWTNVPNMPESWVLANARA 435
           W  AF  L  +W +  +  + ++L N+ A
Sbjct: 117 WFVAFCFLASQWQH--SKSKHFLLGNSSA 143

>sp|O43759|SNG1_HUMAN Synaptogyrin-1
          Length = 234

 Score = 36.6 bits (83), Expect = 0.089
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 9/190 (4%)
 Frame = +1

Query: 169 FCVFNMQTPSCDYAQSVGWISIIFGIYVIILEI-FSQSINLKFLKISFIFEFLINVILSI 345
           FC++N    +C Y  +VG ++ +  +  + L++ F Q  ++K  K + + +  ++   + 
Sbjct: 58  FCIYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAF 117

Query: 346 MWLAAFIDLNVKW--TNVPNMPESWVLANARAVISXXXXXXXIQVLLVISVICGLIQIIR 519
           +W   F  L  +W  +   + P +     ARA I+              S+     Q + 
Sbjct: 118 LWFVGFCYLANQWQVSKPKDNPLNEGTDAARAAIA----------FSFFSIFTWAGQAVL 167

Query: 520 AMGQGDPTAEQPVKDNDNNNIDQTYRLKFTLTRFYYVVSNTGVAVV----QHQQEVNTFH 687
           A  +    A+  +   D  +  Q   + +      YV  NTG         +QQ  NTF 
Sbjct: 168 AFQRYQIGADSALFSQDYMDPSQDSSMPYA----PYVEPNTGPDPAGMGGTYQQPANTFD 223

Query: 688 T--SSYQSIG 711
           T    YQS G
Sbjct: 224 TEPQGYQSQG 233

>sp|O55100|SNG1_MOUSE Synaptogyrin-1
          Length = 234

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 169 FCVFNMQTPSCDYAQSVGWISIIFGIYVIILEI-FSQSINLKFLKISFIFEFLINVILSI 345
           FC++N    +C Y  +VG ++ +  +  + L++ F Q  ++K  K + + +  ++   + 
Sbjct: 58  FCIYNRNPNACSYGVTVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAF 117

Query: 346 MWLAAFIDLNVKW 384
            W   F  L  +W
Sbjct: 118 FWFVGFCFLANQW 130

>sp|Q62876|SNG1_RAT Synaptogyrin-1 (p29)
          Length = 234

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 169 FCVFNMQTPSCDYAQSVGWISIIFGIYVIILEI-FSQSINLKFLKISFIFEFLINVILSI 345
           FC++N    +C Y  +VG ++ +  +  + L++ F Q  ++K  K + + +  ++   + 
Sbjct: 58  FCIYNRNPNACSYGVTVGVLAFLTCLVYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAF 117

Query: 346 MWLAAFIDLNVKW 384
            W   F  L  +W
Sbjct: 118 FWFVGFCFLANQW 130

>sp|P16537|SPC3_STRPU SPEC3 protein
          Length = 208

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 23/77 (29%), Positives = 34/77 (44%)
 Frame = +1

Query: 154 SFLPGFCVFNMQTPSCDYAQSVGWISIIFGIYVIILEIFSQSINLKFLKISFIFEFLINV 333
           + + GF VF    P  D    VG + I F I +              L+I  ++ F +  
Sbjct: 125 TIIAGFAVFCCGNPGADGGSKVGTMCINFWIGL--------------LQIGTVWFFFLGW 170

Query: 334 ILSIMWLAAFIDLNVKW 384
           I SIMW AAFI ++  +
Sbjct: 171 IWSIMWGAAFIGMSADY 187

>sp|P87293|YDN1_SCHPO Hypothetical protein C16A10.01 in chromosome I
          Length = 830

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 220 GWISIIFGIYV-IILEIFSQSINLKFLKISFIFEFLINVILSIM 348
           GW  ++ G  + ++L IF   IN +F     +FE +I++ILS +
Sbjct: 526 GWRDMLIGFVLGLLLGIFRVYINPRFFLFDSLFEVIISIILSFL 569

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,263,400
Number of Sequences: 369166
Number of extensions: 1688625
Number of successful extensions: 3819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3815
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00761

  1. Dr_sW_027_D01
  2. Dr_sW_019_N05
  3. Dr_sW_013_K14
  4. Dr_sW_022_N22