Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_N22
(818 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O55101|SNG2_MOUSE Synaptogyrin-2 (Cellugyrin) 42 0.003
sp|O54980|SNG2_RAT Synaptogyrin-2 (Cellugyrin) 40 0.010
sp|O95473|SNG4_HUMAN Synaptogyrin-4 39 0.017
sp|O43760|SNG2_HUMAN Synaptogyrin-2 (Cellugyrin) 39 0.022
sp|Q9Z1L2|SNG4_MOUSE Synaptogyrin-4 37 0.050
sp|O43759|SNG1_HUMAN Synaptogyrin-1 36 0.11
sp|O55100|SNG1_MOUSE Synaptogyrin-1 35 0.32
sp|Q62876|SNG1_RAT Synaptogyrin-1 (p29) 35 0.32
sp|P16537|SPC3_STRPU SPEC3 protein 33 0.72
sp|P87293|YDN1_SCHPO Hypothetical protein C16A10.01 in chro... 31 4.7
>sp|O55101|SNG2_MOUSE Synaptogyrin-2 (Cellugyrin)
Length = 224
Score = 41.6 bits (96), Expect = 0.003
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +3
Query: 144 FCVFNMQTPSCDYAQSVGWISIIFGIYVIILE-IFSQSINLKFLKISFVFEFLINVILSI 320
+CVFN +C Y ++G ++ + + ++++ FSQ N K + + L + + +
Sbjct: 58 YCVFNQNEDACRYGSAIGVLAFLASAFFLVVDAFFSQISNATDRKYLVIGDLLFSALWTF 117
Query: 321 MWLAAFIDLNVKWTNVPNMPESWVLANARAVIS 419
+W F L +W +ARA I+
Sbjct: 118 LWFVGFCFLTNQWAATKPQDVRVGADSARAAIT 150
>sp|O54980|SNG2_RAT Synaptogyrin-2 (Cellugyrin)
Length = 224
Score = 39.7 bits (91), Expect = 0.010
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 CVFNMQTPSCDYAQSVGWISIIFGIYVIILE-IFSQSINLKFLKISFVFEFLINVILSIM 323
CVFN +C Y ++G ++ + + ++++ FSQ N K + + L + + + +
Sbjct: 59 CVFNRNEDACRYGSAIGVLAFLASAFFLVVDAFFSQISNATDRKYLVIGDLLFSALWTFL 118
Query: 324 WLAAFIDLNVKW 359
W F L +W
Sbjct: 119 WFVGFCFLTNQW 130
>sp|O95473|SNG4_HUMAN Synaptogyrin-4
Length = 234
Score = 38.9 bits (89), Expect = 0.017
Identities = 19/89 (21%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +3
Query: 147 CVFNMQTPSCDYAQSVGWISIIFGIYVIILEIFSQSINLKFLKISF-VFEFLINVILSIM 323
C+ N + +C +A G+++ + + ++L+ I K +F + +F++ V+ +++
Sbjct: 57 CILNSNSVACSFAVGAGFLAFLSCLAFLVLDTQETRIAGTRFKTAFQLLDFILAVLWAVV 116
Query: 324 WLAAFIDLNVKWTNVPNMPESWVLANARA 410
W F L +W + P P+ ++L ++ A
Sbjct: 117 WFMGFCFLANQWQHSP--PKEFLLGSSSA 143
>sp|O43760|SNG2_HUMAN Synaptogyrin-2 (Cellugyrin)
Length = 224
Score = 38.5 bits (88), Expect = 0.022
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 144 FCVFNMQTPSCDYAQSVGWISIIFGIYVIILE-IFSQSINLKFLKISFVFEFLINVILSI 320
+CVFN +C Y ++G ++ + + ++++ F Q N K + + L + + +
Sbjct: 58 YCVFNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTF 117
Query: 321 MWLAAFIDLNVKW 359
+W F L +W
Sbjct: 118 LWFVGFCFLTNQW 130
>sp|Q9Z1L2|SNG4_MOUSE Synaptogyrin-4
Length = 233
Score = 37.4 bits (85), Expect = 0.050
Identities = 20/89 (22%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +3
Query: 147 CVFNMQTPSCDYAQSVGWISIIFGIYVIILEIFSQSINLKFLKISF-VFEFLINVILSIM 323
CV N +C +A G++S + + + ++ + + + KI+F + +F++ V+ + +
Sbjct: 57 CVLNSNHMACSFAVGAGFLSFLSCLVFLAIDAYERRLVGTRFKIAFQLLDFILAVLWAGV 116
Query: 324 WLAAFIDLNVKWTNVPNMPESWVLANARA 410
W AF L +W + + + ++L N+ A
Sbjct: 117 WFVAFCFLASQWQH--SKSKHFLLGNSSA 143
>sp|O43759|SNG1_HUMAN Synaptogyrin-1
Length = 234
Score = 36.2 bits (82), Expect = 0.11
Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 9/190 (4%)
Frame = +3
Query: 144 FCVFNMQTPSCDYAQSVGWISIIFGIYVIILEI-FSQSINLKFLKISFVFEFLINVILSI 320
FC++N +C Y +VG ++ + + + L++ F Q ++K K + + + ++ +
Sbjct: 58 FCIYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAF 117
Query: 321 MWLAAFIDLNVKW--TNVPNMPESWVLANARAVISXXXXXXXIQVLLVISVICGLIQIIR 494
+W F L +W + + P + ARA I+ S+ Q +
Sbjct: 118 LWFVGFCYLANQWQVSKPKDNPLNEGTDAARAAIA----------FSFFSIFTWAGQAVL 167
Query: 495 AMGQGDPTAEQPVKDNDNNNIDQTYRLKFTLTRFYYVVSNTGVAVV----QHQQEVNTFH 662
A + A+ + D + Q + + YV NTG +QQ NTF
Sbjct: 168 AFQRYQIGADSALFSQDYMDPSQDSSMPYA----PYVEPNTGPDPAGMGGTYQQPANTFD 223
Query: 663 T--SSYQSIG 686
T YQS G
Sbjct: 224 TEPQGYQSQG 233
>sp|O55100|SNG1_MOUSE Synaptogyrin-1
Length = 234
Score = 34.7 bits (78), Expect = 0.32
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 144 FCVFNMQTPSCDYAQSVGWISIIFGIYVIILEI-FSQSINLKFLKISFVFEFLINVILSI 320
FC++N +C Y +VG ++ + + + L++ F Q ++K K + + + ++ +
Sbjct: 58 FCIYNRNPNACSYGVTVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAF 117
Query: 321 MWLAAFIDLNVKW 359
W F L +W
Sbjct: 118 FWFVGFCFLANQW 130
>sp|Q62876|SNG1_RAT Synaptogyrin-1 (p29)
Length = 234
Score = 34.7 bits (78), Expect = 0.32
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 144 FCVFNMQTPSCDYAQSVGWISIIFGIYVIILEI-FSQSINLKFLKISFVFEFLINVILSI 320
FC++N +C Y +VG ++ + + + L++ F Q ++K K + + + ++ +
Sbjct: 58 FCIYNRNPNACSYGVTVGVLAFLTCLVYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAF 117
Query: 321 MWLAAFIDLNVKW 359
W F L +W
Sbjct: 118 FWFVGFCFLANQW 130
>sp|P16537|SPC3_STRPU SPEC3 protein
Length = 208
Score = 33.5 bits (75), Expect = 0.72
Identities = 24/77 (31%), Positives = 34/77 (44%)
Frame = +3
Query: 129 SFLPGFCVFNMQTPSCDYAQSVGWISIIFGIYVIILEIFSQSINLKFLKISFVFEFLINV 308
+ + GF VF P D VG + I F I + L+I V+ F +
Sbjct: 125 TIIAGFAVFCCGNPGADGGSKVGTMCINFWIGL--------------LQIGTVWFFFLGW 170
Query: 309 ILSIMWLAAFIDLNVKW 359
I SIMW AAFI ++ +
Sbjct: 171 IWSIMWGAAFIGMSADY 187
>sp|P87293|YDN1_SCHPO Hypothetical protein C16A10.01 in chromosome I
Length = 830
Score = 30.8 bits (68), Expect = 4.7
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 195 GWISIIFGIYV-IILEIFSQSINLKFLKISFVFEFLINVILSIM 323
GW ++ G + ++L IF IN +F +FE +I++ILS +
Sbjct: 526 GWRDMLIGFVLGLLLGIFRVYINPRFFLFDSLFEVIISIILSFL 569
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,069,498
Number of Sequences: 369166
Number of extensions: 1645714
Number of successful extensions: 3735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3731
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)