Planaria EST Database

DrC_00756

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00756
         (1131 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96MU7|YT521_HUMAN  Putative splicing factor YT521             198   3e-50
sp|Q9QY02|YT521_RAT  Putative splicing factor YT521 (RA301-b...   194   4e-49
sp|Q9Y5A9|YTHD2_HUMAN  YTH domain protein 2 (High-glucose-re...    63   1e-09
sp|Q9BYJ9|YTHD1_HUMAN  YTH domain protein 1 (Dermatomyositis...    57   1e-07
sp|P59326|YTHD1_MOUSE  YTH domain protein 1 (Dermatomyositis...    56   2e-07
sp|Q9NYU1|UGGG2_HUMAN  UDP-glucose:glycoprotein glucosyltran...    33   2.0  
sp|Q9QZQ0|NPAS3_MOUSE  Neuronal PAS domain protein 3 (Neuron...    33   2.0  
sp|Q9HC84|MUC5B_HUMAN  Mucin-5B precursor (Mucin 5 subtype B...    31   5.7  
sp|P47642|ATPD_MYCGE  ATP synthase delta chain                     31   7.5  
sp|O52788|PTK_ACIJO  Tyrosine-protein kinase ptk                   30   9.8  

>sp|Q96MU7|YT521_HUMAN Putative splicing factor YT521
          Length = 727

 Score =  198 bits (503), Expect = 3e-50
 Identities = 103/194 (53%), Positives = 129/194 (66%), Gaps = 14/194 (7%)
 Frame = +2

Query: 155 TRIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRLNKAYYETKNVLLIFSVKE 334
           +++KY+  +AR+F+IKSNN ENVSLAK K VWST   NE +LN A+   ++V+LIFSV+E
Sbjct: 346 SKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRE 405

Query: 335 SGKFQGYARLSSASNPK-KHINWVLPTHMSQKQLSGIFQIDWLSREEVPFSKTNHLVNAW 511
           SGKFQG+ARLSS S+     I+WVLP  MS K L G+F+IDW+ R E+PF+K+ HL N W
Sbjct: 406 SGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPW 465

Query: 512 NEHKPVKIGRDGQEIEPSCGEFLCRLFVLDEDCKFNEIIDKAK-----------AGPPEY 658
           NEHKPVKIGRDGQEIE  CG  LC LF  DE     ++I K +            G P  
Sbjct: 466 NEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSR 525

Query: 659 RD--RDSNRTHPSD 694
           R+  RD  R  P D
Sbjct: 526 REPVRDVGRRRPED 539

>sp|Q9QY02|YT521_RAT Putative splicing factor YT521 (RA301-binding protein)
          Length = 738

 Score =  194 bits (493), Expect = 4e-49
 Identities = 102/194 (52%), Positives = 128/194 (65%), Gaps = 14/194 (7%)
 Frame = +2

Query: 155 TRIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRLNKAYYETKNVLLIFSVKE 334
           +++K +  +AR+F+IKSNN ENVSLAK K VWST   NE +LN A+   ++V+LIFSV+E
Sbjct: 349 SKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRE 408

Query: 335 SGKFQGYARLSSASNPK-KHINWVLPTHMSQKQLSGIFQIDWLSREEVPFSKTNHLVNAW 511
           SGKFQG+ARLSS S+     I+WVLP  MS K L G+F+IDW+ R E+PF+K+ HL N W
Sbjct: 409 SGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPW 468

Query: 512 NEHKPVKIGRDGQEIEPSCGEFLCRLFVLDEDCKFNEIIDKAK-----------AGPPEY 658
           NEHKPVKIGRDGQEIE  CG  LC LF  DE     ++I K +            G P  
Sbjct: 469 NEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSR 528

Query: 659 RD--RDSNRTHPSD 694
           R+  RD  R  P D
Sbjct: 529 REPVRDVGRRRPED 542

>sp|Q9Y5A9|YTHD2_HUMAN YTH domain protein 2 (High-glucose-regulated protein 8) (NY-REN-2
           antigen) (CLL-associated antigen KW-14)
          Length = 579

 Score = 63.2 bits (152), Expect = 1e-09
 Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
 Frame = +2

Query: 140 NYRLPTRIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRLNKAYYETKN---V 310
           NY  P    +     R F+IKS + +++  +   N+W +T     RL+ AY        V
Sbjct: 397 NYN-PKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPV 455

Query: 311 LLIFSVKESGKFQGYARLSSASNPKKHIN-WVLPTHMSQKQLSGIFQIDWLSREEVPFSK 487
            L+FSV  SG F G A + SA +       W      SQ +  G F + W+  ++VP S+
Sbjct: 456 YLLFSVNGSGHFCGVAEMKSAVDYNTCAGVW------SQDKWKGRFDVRWIFVKDVPNSQ 509

Query: 488 TNHLVNAWNEHKPVKIGRDGQEI 556
             H+    NE+KPV   RD QE+
Sbjct: 510 LRHIRLENNENKPVTNSRDTQEV 532

>sp|Q9BYJ9|YTHD1_HUMAN YTH domain protein 1 (Dermatomyositis associated with cancer
           putative autoantigen 1) (DACA-1)
          Length = 559

 Score = 56.6 bits (135), Expect = 1e-07
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
 Frame = +2

Query: 152 PTRIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRLNKAYYETKN---VLLIF 322
           P   ++     R F+IKS + +++  +   ++W +T     RL+ A+    +   V L+F
Sbjct: 379 PKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLF 438

Query: 323 SVKESGKFQGYARLSSASNPKKHIN-WVLPTHMSQKQLSGIFQIDWLSREEVPFSKTNHL 499
           SV  SG F G A + S  +       W      SQ +  G F + W+  ++VP ++  H+
Sbjct: 439 SVNGSGHFCGVAEMKSPVDYGTSAGVW------SQDKWKGKFDVQWIFVKDVPNNQLRHI 492

Query: 500 VNAWNEHKPVKIGRDGQEI 556
               N++KPV   RD QE+
Sbjct: 493 RLENNDNKPVTNSRDTQEV 511

>sp|P59326|YTHD1_MOUSE YTH domain protein 1 (Dermatomyositis associated with cancer
           putative autoantigen 1 homolog) (DACA-1 homolog)
          Length = 559

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
 Frame = +2

Query: 152 PTRIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRLNKAYYETKN---VLLIF 322
           P    +     R F+IKS + +++  +   ++W +T     RL+ A+    +   V L+F
Sbjct: 379 PKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKGPVYLLF 438

Query: 323 SVKESGKFQGYARLSSASNPKKHIN-WVLPTHMSQKQLSGIFQIDWLSREEVPFSKTNHL 499
           SV  SG F G A + S  +       W      SQ +  G F + W+  ++VP ++  H+
Sbjct: 439 SVNGSGHFCGVAEMKSPVDYGTSAGVW------SQDKWKGKFDVKWIFVKDVPNNQLRHI 492

Query: 500 VNAWNEHKPVKIGRDGQEI 556
               N++KPV   RD QE+
Sbjct: 493 RLENNDNKPVTNSRDTQEV 511

>sp|Q9NYU1|UGGG2_HUMAN UDP-glucose:glycoprotein glucosyltransferase 2 precursor (UDP-glucose
            ceramide glucosyltransferase-like 1)
            (UDP--Glc:glycoprotein glucosyltransferase 2) (HUGT2)
          Length = 1516

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = +2

Query: 233  KVKNVWSTTRANEIRLNKAYYETKNVLLIFSVKESGKFQGYAR---LSSASNPKKHIN-W 400
            K K +W + ++  + L+K   + K+VL IFSV     ++ + R   LS   N K  +  W
Sbjct: 1205 KTKGLWDSIKSFTVSLHKENKKEKDVLNIFSVASGHLYERFLRIMMLSVLRNTKTPVKFW 1264

Query: 401  VLPTHMS 421
            +L  ++S
Sbjct: 1265 LLKNYLS 1271

>sp|Q9QZQ0|NPAS3_MOUSE Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of PAS
           protein 6) (MOP6)
          Length = 925

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 101 QRICTQSSPNVDANYRLPTRIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRL 280
           +R+ + SSP +DA    P R+    H A    IK+   E ++     ++W+     EI  
Sbjct: 620 RRLSSASSPGLDAGLVEPPRLLSSPHSASVLKIKTEIAEPINFDNESSIWNYPPNREISR 679

Query: 281 NKAYY 295
           N++ Y
Sbjct: 680 NESPY 684

>sp|Q9HC84|MUC5B_HUMAN Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial) (High
            molecular weight salivary mucin MG1) (Sublingual gland
            mucin)
          Length = 5703

 Score = 31.2 bits (69), Expect = 5.7
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +3

Query: 663  IATQIAPTRQTAATKTTIATNQFPMVNLAMMTIDPNITAA 782
            IAT + PT  TA T +T+ T   P V  AM T+ P  TA+
Sbjct: 4795 IATVMVPTGSTATTSSTLGTAHTPKVVTAMATM-PTATAS 4833

>sp|P47642|ATPD_MYCGE ATP synthase delta chain
          Length = 176

 Score = 30.8 bits (68), Expect = 7.5
 Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
 Frame = +2

Query: 158 RIKYLFHEARYFMIKSNNFENVSLAKVKNVWSTTRANEIRLNKAYYETKNVLLIFSVKES 337
           ++K ++ E  +F+    NF++ SL+ + N ++ T+ ++IRL    ++     +     + 
Sbjct: 20  QVKKIYEECHFFLKLMRNFKDGSLSFLLNSYTLTKPDKIRLVDKLFKNHFCQVFVDFLKV 79

Query: 338 GKFQGYARLSSAS--------NPKKHINW---VLPTHMSQKQLSGIFQI 451
              +GY  L   +          +KHI +   +    +S KQL+ I  I
Sbjct: 80  IILKGYFTLVEQAIKYFFDNVESQKHIQFIKIITAFELSSKQLNKIIAI 128

>sp|O52788|PTK_ACIJO Tyrosine-protein kinase ptk
          Length = 733

 Score = 30.4 bits (67), Expect = 9.8
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
 Frame = +2

Query: 128 NVDANYRLPTRIKYLFHEARYFMIKSNNFENVSLAKVKN---------VWSTTRANEIRL 280
           N+ A++R   +I+  F + ++ +  +   + +   K            +W+ +   + +L
Sbjct: 151 NIPASFR-DKKIELRFKDGQFSLTNTQTEQVILTGKTNQSNTLRTADGLWNISIYTQDQL 209

Query: 281 NKAYYETK--------NVLLIFSVKESGKFQGYARLSSASNPKKHINWVL 406
           N  Y   K        N+L  +SV E GK  G   L+     K HI  VL
Sbjct: 210 NDVYLIQKQSLPAAVNNILTNYSVAEKGKLTGILGLNYQGTDKTHITQVL 259

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,687,304
Number of Sequences: 369166
Number of extensions: 1993604
Number of successful extensions: 4262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4255
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12583470240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00756

  1. Dr_sW_019_K12
  2. Dr_sW_013_H12