Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_H12
(830 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96MU7|YT521_HUMAN Putative splicing factor YT521 142 1e-33
sp|Q9QY02|YT521_RAT Putative splicing factor YT521 (RA301-b... 142 1e-33
sp|Q9Y5A9|YTHD2_HUMAN YTH domain protein 2 (High-glucose-re... 47 6e-05
sp|Q9BYJ9|YTHD1_HUMAN YTH domain protein 1 (Dermatomyositis... 44 7e-04
sp|P59326|YTHD1_MOUSE YTH domain protein 1 (Dermatomyositis... 43 0.001
sp|Q9HC84|MUC5B_HUMAN Mucin-5B precursor (Mucin 5 subtype B... 31 3.7
sp|Q95661|HS21C_LYCES Small heat shock protein, chloroplast... 30 8.2
>sp|Q96MU7|YT521_HUMAN Putative splicing factor YT521
Length = 727
Score = 142 bits (358), Expect = 1e-33
Identities = 76/145 (52%), Positives = 93/145 (64%), Gaps = 14/145 (9%)
Frame = +1
Query: 1 KNVLLIFSVKESGKFQGYARLSSASNPK-KHINWVLPTHMSQKQLSGIFQIDWLSREEVP 177
++V+LIFSV+ESGKFQG+ARLSS S+ I+WVLP MS K L G+F+IDW+ R E+P
Sbjct: 395 RSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELP 454
Query: 178 FSKTNHLVNAWNEHKPVKIGRDGQEIEPSCGEFLCRLFVLDEDCKFNEIIDKAK------ 339
F+K+ HL N WNEHKPVKIGRDGQEIE CG LC LF DE ++I K +
Sbjct: 455 FTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMH 514
Query: 340 -----AGPPEYRD--RDSNRTHPSD 393
G P R+ RD R P D
Sbjct: 515 SQPRSRGRPSRREPVRDVGRRRPED 539
>sp|Q9QY02|YT521_RAT Putative splicing factor YT521 (RA301-binding protein)
Length = 738
Score = 142 bits (357), Expect = 1e-33
Identities = 76/145 (52%), Positives = 93/145 (64%), Gaps = 14/145 (9%)
Frame = +1
Query: 1 KNVLLIFSVKESGKFQGYARLSSASNPK-KHINWVLPTHMSQKQLSGIFQIDWLSREEVP 177
++V+LIFSV+ESGKFQG+ARLSS S+ I+WVLP MS K L G+F+IDW+ R E+P
Sbjct: 398 RSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELP 457
Query: 178 FSKTNHLVNAWNEHKPVKIGRDGQEIEPSCGEFLCRLFVLDEDCKFNEIIDKAK------ 339
F+K+ HL N WNEHKPVKIGRDGQEIE CG LC LF DE ++I K +
Sbjct: 458 FTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQLIHKMRHKRRMH 517
Query: 340 -----AGPPEYRD--RDSNRTHPSD 393
G P R+ RD R P D
Sbjct: 518 SQPRSRGRPSRREPVRDVGRRRPED 542
>sp|Q9Y5A9|YTHD2_HUMAN YTH domain protein 2 (High-glucose-regulated protein 8) (NY-REN-2
antigen) (CLL-associated antigen KW-14)
Length = 579
Score = 47.0 bits (110), Expect = 6e-05
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +1
Query: 7 VLLIFSVKESGKFQGYARLSSASNPKKHIN-WVLPTHMSQKQLSGIFQIDWLSREEVPFS 183
V L+FSV SG F G A + SA + W SQ + G F + W+ ++VP S
Sbjct: 455 VYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVW------SQDKWKGRFDVRWIFVKDVPNS 508
Query: 184 KTNHLVNAWNEHKPVKIGRDGQEI 255
+ H+ NE+KPV RD QE+
Sbjct: 509 QLRHIRLENNENKPVTNSRDTQEV 532
>sp|Q9BYJ9|YTHD1_HUMAN YTH domain protein 1 (Dermatomyositis associated with cancer
putative autoantigen 1) (DACA-1)
Length = 559
Score = 43.5 bits (101), Expect = 7e-04
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 7 VLLIFSVKESGKFQGYARLSSASNPKKHIN-WVLPTHMSQKQLSGIFQIDWLSREEVPFS 183
V L+FSV SG F G A + S + W SQ + G F + W+ ++VP +
Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVW------SQDKWKGKFDVQWIFVKDVPNN 487
Query: 184 KTNHLVNAWNEHKPVKIGRDGQEI 255
+ H+ N++KPV RD QE+
Sbjct: 488 QLRHIRLENNDNKPVTNSRDTQEV 511
>sp|P59326|YTHD1_MOUSE YTH domain protein 1 (Dermatomyositis associated with cancer
putative autoantigen 1 homolog) (DACA-1 homolog)
Length = 559
Score = 43.1 bits (100), Expect = 0.001
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 7 VLLIFSVKESGKFQGYARLSSASNPKKHIN-WVLPTHMSQKQLSGIFQIDWLSREEVPFS 183
V L+FSV SG F G A + S + W SQ + G F + W+ ++VP +
Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVW------SQDKWKGKFDVKWIFVKDVPNN 487
Query: 184 KTNHLVNAWNEHKPVKIGRDGQEI 255
+ H+ N++KPV RD QE+
Sbjct: 488 QLRHIRLENNDNKPVTNSRDTQEV 511
>sp|Q9HC84|MUC5B_HUMAN Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial) (High
molecular weight salivary mucin MG1) (Sublingual gland
mucin)
Length = 5703
Score = 31.2 bits (69), Expect = 3.7
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +2
Query: 362 IATQIAPTRQTAATKTTIATNQFPMVNLAMMTIDPNITAA 481
IAT + PT TA T +T+ T P V AM T+ P TA+
Sbjct: 4795 IATVMVPTGSTATTSSTLGTAHTPKVVTAMATM-PTATAS 4833
>sp|Q95661|HS21C_LYCES Small heat shock protein, chloroplast precursor
Length = 235
Score = 30.0 bits (66), Expect = 8.2
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = +1
Query: 112 HMSQKQLSGIFQIDWLSREEVPFSKTNHLVNAWNEHKPVKIGRDGQEIEPSCGEFLCRLF 291
H + ++ F + LS+E+V S N ++ EHK + GRD + + RL
Sbjct: 138 HDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLS 197
Query: 292 VLDEDCKFNEIIDKAKA 342
+ D N + DK KA
Sbjct: 198 LPD-----NVVKDKIKA 209
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,038,180
Number of Sequences: 369166
Number of extensions: 1414062
Number of successful extensions: 3183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3179
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)