Planaria EST Database

DrC_00750

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00750
         (453 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5RCF7|PDZK1_PONPY  PDZ domain containing protein 1 (Na(+...    32   0.65 
sp|P57528|EX5C_BUCAI  Exodeoxyribonuclease V gamma chain           32   0.85 
sp|Q8NB49|AT11C_HUMAN  Probable phospholipid-transporting AT...    31   1.4  
sp|Q5T2W1|PDZK1_HUMAN  PDZ domain containing protein 1 (CFTR...    29   4.2  
sp|Q37896|LYS_BPB03  Lysozyme (Lysis protein) (Muramidase) (...    29   5.5  
sp|Q7NAV0|RS4_MYCGA  30S ribosomal protein S4                      29   5.5  
sp|Q8K1Y2|KPCN_MOUSE  Protein kinase C, nu type (nPKC-nu)          28   7.2  
sp|O94806|KPCN_HUMAN  Protein kinase C, nu type (nPKC-nu) (P...    28   7.2  
sp|P15711|104K_THEPA  104 KD MICRONEME-RHOPTRY ANTIGEN             28   7.2  
sp|P46743|RT04_PROWI  Mitochondrial ribosomal protein S4           28   7.2  

>sp|Q5RCF7|PDZK1_PONPY PDZ domain containing protein 1 (Na(+)/H(+) exchanger regulatory
           factor 3) (Sodium-hydrogen exchanger regulatory factor
           3)
          Length = 519

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +2

Query: 35  VTIDAQSVSVKASLQEPCEGEINKSTSNGGYVEYSVHNTLRHDI----NLPLIISICDNE 202
           V I+   V+V   L EP E  +++  S+G  V   V     +D      +P++ S+ D  
Sbjct: 422 VIIEVNGVNV---LDEPYEKVVDRIQSSGKNVTLLVCGKKAYDYFQAKKIPIVSSLADPP 478

Query: 203 NDCYDDKETITVESKSKTSIRRKVA 277
           +   D KE I VESK  + + ++ A
Sbjct: 479 DTPPDSKEGIVVESKHDSHMAKERA 503

>sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain
          Length = 1070

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +2

Query: 158 HDINLPLIISICDNENDCYDDKETITVESKSKTSIRR-----KVALLKTYKNPGEINIKM 322
           H+I LP +++ C  ++ CY   + I +     TSI +        LLK Y   G+IN+  
Sbjct: 605 HEIFLPGVVNFCYPDSVCYIPFKVICMIGTDHTSIPKTNYLDNFNLLKKYPLIGDINLYQ 664

Query: 323 KVS 331
           K S
Sbjct: 665 KYS 667

>sp|Q8NB49|AT11C_HUMAN Probable phospholipid-transporting ATPase IG (ATPase class I type
           11C) (ATPase IG) (ATPase IQ) (ATPase class VI type 11C)
          Length = 1132

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
 Frame = +2

Query: 29  FMVTIDAQSVSVKASLQEPCEGEINKST-----------------SNGGYVEYSVHNTLR 157
           F++T+ A     +  L+   + E+NKST                   G  VE     T  
Sbjct: 100 FVITVTAIKQGYEDCLRHRADNEVNKSTVYIIENAKRVRKESEKIKVGDVVEVQADETFP 159

Query: 158 HDINLPLIISICDNENDCYDDKETITVESKSKT--SIRRKVAL 280
            D+   +++S C  +  CY    ++  ES  KT  ++R  +AL
Sbjct: 160 CDL---ILLSSCTTDGTCYVTTASLDGESNCKTHYAVRDTIAL 199

>sp|Q5T2W1|PDZK1_HUMAN PDZ domain containing protein 1 (CFTR-associated protein of 70 kDa)
           (Na/Pi cotransporter C-terminal-associated protein)
           (NaPi-Cap1) (Na(+)/H(+) exchanger regulatory factor 3)
           (Sodium-hydrogen exchanger regulatory factor 3)
          Length = 519

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +2

Query: 35  VTIDAQSVSVKASLQEPCEGEINKSTSNGGYVEYSVHNTLRHDI----NLPLIISICDNE 202
           V I+   V+V   L EP E  +++  S+G  V   V     +D      +P++ S+ D  
Sbjct: 422 VIIEVNGVNV---LDEPYEKVVDRIQSSGKNVTLLVCGKKAYDYFQAKKIPIVSSLADPL 478

Query: 203 NDCYDDKETITVESKSKTSIRRKVA 277
           +   D KE I VES   + + ++ A
Sbjct: 479 DTPPDSKEGIVVESNHDSHMAKERA 503

>sp|Q37896|LYS_BPB03 Lysozyme (Lysis protein) (Muramidase) (Endolysin) (Morphogenesis
           protein 2)
          Length = 263

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +2

Query: 236 VESKSKTSIRRKVALLKTYKNPGEINIKMKVSLGNSKATASCSFLLE 376
           +  K KTS +  + L  T KNP +I +  ++++G S   ++  + ++
Sbjct: 176 IAKKIKTSTKTLLELNPTIKNPNKIYVGQRINVGGSPVKSTLKYKIK 222

>sp|Q7NAV0|RS4_MYCGA 30S ribosomal protein S4
          Length = 207

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 95  EINKSTSNGGYVEYSVHNTLRHDINLPLII 184
           E+NK T +G YV Y   N L  D+N   ++
Sbjct: 170 EVNKKTLSGTYVRYPERNELPADVNETYVV 199

>sp|Q8K1Y2|KPCN_MOUSE Protein kinase C, nu type (nPKC-nu)
          Length = 889

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
 Frame = +2

Query: 35  VTIDAQSVSVKASLQEPCEGEINKSTSNGGYVEYSVHNTLRHDINLPLIISICDNENDCY 214
           VTI+AQ +S+ A     C     K    G +  Y      RHD+N   I+ +  + ++ +
Sbjct: 73  VTIEAQELSLSAVKDLVCSIVYQKFPECGFFGMYDKILLFRHDMNSENILQLITSADEIH 132

Query: 215 DDKETITVESKSKT----SIRRKVALLKTYKNP 301
           +      V S   T     IR     + +YK P
Sbjct: 133 EGDLVEVVLSALATVEDFQIRPHALYVHSYKAP 165

>sp|O94806|KPCN_HUMAN Protein kinase C, nu type (nPKC-nu) (Protein kinase EPK2)
          Length = 890

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
 Frame = +2

Query: 35  VTIDAQSVSVKASLQEPCEGEINKSTSNGGYVEYSVHNTLRHDINLPLIISICDNENDCY 214
           VTI+AQ +S+ A     C     K    G +  Y      RHD+N   I+ +  + ++ +
Sbjct: 73  VTIEAQELSLSAVKDLVCSIVYQKFPECGFFGMYDKILLFRHDMNSENILQLITSADEIH 132

Query: 215 DDKETITVESKSKT----SIRRKVALLKTYKNP 301
           +      V S   T     IR     + +YK P
Sbjct: 133 EGDLVEVVLSALATVEDFQIRPHTLYVHSYKAP 165

>sp|P15711|104K_THEPA 104 KD MICRONEME-RHOPTRY ANTIGEN
          Length = 924

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 188 ICDNENDCYDDKETITVESKSKTSIRRKVALLKTYKNP 301
           + D+E    DD+ET   E + KT +RR+    K  K+P
Sbjct: 855 VVDDEGTEADDEETHPPEERQKTEVRRRRPPKKPSKSP 892

>sp|P46743|RT04_PROWI Mitochondrial ribosomal protein S4
          Length = 511

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +1

Query: 226 NNYSRIEIKNFH*KKSRSAENL*KSW*NKY*NESFTR*FKSDRQLLIFIGMKNKISTVNQ 405
           N  S + I NF     R  +++ K    K   +S++R  KS       I  +NK+ T+NQ
Sbjct: 54  NKNSLLNISNFR-DLERQEKDIQKKTSKKVYKKSYSRSTKSIYSRTKIINERNKLHTLNQ 112

Query: 406 IVI*SLISR 432
            +I S ++R
Sbjct: 113 QIIFSTLAR 121

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,434,696
Number of Sequences: 369166
Number of extensions: 747728
Number of successful extensions: 2219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2218
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00750

  1. Dr_sW_020_N02
  2. Dr_sW_019_I08
  3. Dr_sW_025_P14