Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_I08
(453 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5RCF7|PDZK1_PONPY PDZ domain containing protein 1 (Na(+... 32 0.65
sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain 32 0.85
sp|Q8NB49|AT11C_HUMAN Probable phospholipid-transporting AT... 31 1.4
sp|P46743|RT04_PROWI Mitochondrial ribosomal protein S4 30 2.5
sp|Q5T2W1|PDZK1_HUMAN PDZ domain containing protein 1 (CFTR... 29 4.2
sp|Q37896|LYS_BPB03 Lysozyme (Lysis protein) (Muramidase) (... 29 5.5
sp|Q7NAV0|RS4_MYCGA 30S ribosomal protein S4 29 5.5
sp|Q8K1Y2|KPCN_MOUSE Protein kinase C, nu type (nPKC-nu) 28 7.2
sp|O94806|KPCN_HUMAN Protein kinase C, nu type (nPKC-nu) (P... 28 7.2
sp|P15711|104K_THEPA 104 KD MICRONEME-RHOPTRY ANTIGEN 28 7.2
>sp|Q5RCF7|PDZK1_PONPY PDZ domain containing protein 1 (Na(+)/H(+) exchanger regulatory
factor 3) (Sodium-hydrogen exchanger regulatory factor
3)
Length = 519
Score = 32.0 bits (71), Expect = 0.65
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +2
Query: 35 VTIDAQSVSVKASLQEPCEGEINKSTSNGGYVEYSVHNTLRHDI----NLPLIISICDNE 202
V I+ V+V L EP E +++ S+G V V +D +P++ S+ D
Sbjct: 422 VIIEVNGVNV---LDEPYEKVVDRIQSSGKNVTLLVCGKKAYDYFQAKKIPIVSSLADPP 478
Query: 203 NDCYDDKETITVESKSKTSIRRKVA 277
+ D KE I VESK + + ++ A
Sbjct: 479 DTPPDSKEGIVVESKHDSHMAKERA 503
>sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain
Length = 1070
Score = 31.6 bits (70), Expect = 0.85
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 158 HDINLPLIISICDNENDCYDDKETITVESKSKTSIRR-----KVALLKTYKNPGEINIKM 322
H+I LP +++ C ++ CY + I + TSI + LLK Y G+IN+
Sbjct: 605 HEIFLPGVVNFCYPDSVCYIPFKVICMIGTDHTSIPKTNYLDNFNLLKKYPLIGDINLYQ 664
Query: 323 KVS 331
K S
Sbjct: 665 KYS 667
>sp|Q8NB49|AT11C_HUMAN Probable phospholipid-transporting ATPase IG (ATPase class I type
11C) (ATPase IG) (ATPase IQ) (ATPase class VI type 11C)
Length = 1132
Score = 30.8 bits (68), Expect = 1.4
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Frame = +2
Query: 29 FMVTIDAQSVSVKASLQEPCEGEINKST-----------------SNGGYVEYSVHNTLR 157
F++T+ A + L+ + E+NKST G VE T
Sbjct: 100 FVITVTAIKQGYEDCLRHRADNEVNKSTVYIIENAKRVRKESEKIKVGDVVEVQADETFP 159
Query: 158 HDINLPLIISICDNENDCYDDKETITVESKSKT--SIRRKVAL 280
D+ +++S C + CY ++ ES KT ++R +AL
Sbjct: 160 CDL---ILLSSCTTDGTCYVTTASLDGESNCKTHYAVRDTIAL 199
>sp|P46743|RT04_PROWI Mitochondrial ribosomal protein S4
Length = 511
Score = 30.0 bits (66), Expect = 2.5
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +1
Query: 226 NNYSRIEIKNFH*KKSRSAENL*KSW*NKY*NESFTR*FKSDRQLLIFIGMKNKISTVNQ 405
N S + I NF R +++ K K +S++R KS I +NK+ T+NQ
Sbjct: 54 NKNSLLNISNFR-DLERQEKDIQKKTSKKVYKKSYSRSTKSIYSRTKIINERNKLHTLNQ 112
Query: 406 IVILSLISR 432
+I S ++R
Sbjct: 113 QIIFSTLAR 121
>sp|Q5T2W1|PDZK1_HUMAN PDZ domain containing protein 1 (CFTR-associated protein of 70 kDa)
(Na/Pi cotransporter C-terminal-associated protein)
(NaPi-Cap1) (Na(+)/H(+) exchanger regulatory factor 3)
(Sodium-hydrogen exchanger regulatory factor 3)
Length = 519
Score = 29.3 bits (64), Expect = 4.2
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +2
Query: 35 VTIDAQSVSVKASLQEPCEGEINKSTSNGGYVEYSVHNTLRHDI----NLPLIISICDNE 202
V I+ V+V L EP E +++ S+G V V +D +P++ S+ D
Sbjct: 422 VIIEVNGVNV---LDEPYEKVVDRIQSSGKNVTLLVCGKKAYDYFQAKKIPIVSSLADPL 478
Query: 203 NDCYDDKETITVESKSKTSIRRKVA 277
+ D KE I VES + + ++ A
Sbjct: 479 DTPPDSKEGIVVESNHDSHMAKERA 503
>sp|Q37896|LYS_BPB03 Lysozyme (Lysis protein) (Muramidase) (Endolysin) (Morphogenesis
protein 2)
Length = 263
Score = 28.9 bits (63), Expect = 5.5
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 236 VESKSKTSIRRKVALLKTYKNPGEINIKMKVSLGNSKATASCSFLLE 376
+ K KTS + + L T KNP +I + ++++G S ++ + ++
Sbjct: 176 IAKKIKTSTKTLLELNPTIKNPNKIYVGQRINVGGSPVKSTLKYKIK 222
>sp|Q7NAV0|RS4_MYCGA 30S ribosomal protein S4
Length = 207
Score = 28.9 bits (63), Expect = 5.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 95 EINKSTSNGGYVEYSVHNTLRHDINLPLII 184
E+NK T +G YV Y N L D+N ++
Sbjct: 170 EVNKKTLSGTYVRYPERNELPADVNETYVV 199
>sp|Q8K1Y2|KPCN_MOUSE Protein kinase C, nu type (nPKC-nu)
Length = 889
Score = 28.5 bits (62), Expect = 7.2
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Frame = +2
Query: 35 VTIDAQSVSVKASLQEPCEGEINKSTSNGGYVEYSVHNTLRHDINLPLIISICDNENDCY 214
VTI+AQ +S+ A C K G + Y RHD+N I+ + + ++ +
Sbjct: 73 VTIEAQELSLSAVKDLVCSIVYQKFPECGFFGMYDKILLFRHDMNSENILQLITSADEIH 132
Query: 215 DDKETITVESKSKT----SIRRKVALLKTYKNP 301
+ V S T IR + +YK P
Sbjct: 133 EGDLVEVVLSALATVEDFQIRPHALYVHSYKAP 165
>sp|O94806|KPCN_HUMAN Protein kinase C, nu type (nPKC-nu) (Protein kinase EPK2)
Length = 890
Score = 28.5 bits (62), Expect = 7.2
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Frame = +2
Query: 35 VTIDAQSVSVKASLQEPCEGEINKSTSNGGYVEYSVHNTLRHDINLPLIISICDNENDCY 214
VTI+AQ +S+ A C K G + Y RHD+N I+ + + ++ +
Sbjct: 73 VTIEAQELSLSAVKDLVCSIVYQKFPECGFFGMYDKILLFRHDMNSENILQLITSADEIH 132
Query: 215 DDKETITVESKSKT----SIRRKVALLKTYKNP 301
+ V S T IR + +YK P
Sbjct: 133 EGDLVEVVLSALATVEDFQIRPHTLYVHSYKAP 165
>sp|P15711|104K_THEPA 104 KD MICRONEME-RHOPTRY ANTIGEN
Length = 924
Score = 28.5 bits (62), Expect = 7.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 188 ICDNENDCYDDKETITVESKSKTSIRRKVALLKTYKNP 301
+ D+E DD+ET E + KT +RR+ K K+P
Sbjct: 855 VVDDEGTEADDEETHPPEERQKTEVRRRRPPKKPSKSP 892
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,086,328
Number of Sequences: 369166
Number of extensions: 740991
Number of successful extensions: 2205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2204
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)