Planaria EST Database

DrC_00730

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00730
         (856 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99020|ROAA_MOUSE  Heterogeneous nuclear ribonucleoprotei...    95   2e-19
sp|Q14103|HNRPD_HUMAN  Heterogeneous nuclear ribonucleoprote...    92   2e-18
sp|P17132|HNRPC_RAT  Heterogeneous nuclear ribonucleoprotein...    92   2e-18
sp|Q9JJ54|HNRPD_RAT  Heterogeneous nuclear ribonucleoprotein...    92   2e-18
sp|Q60668|HNRPD_MOUSE  Heterogeneous nuclear ribonucleoprote...    92   2e-18
sp|Q99729|ROAA_HUMAN  Heterogeneous nuclear ribonucleoprotei...    87   6e-17
sp|P07029|HNRU2_HUMAN  Heterogeneous nuclear ribonucleoprote...    82   1e-15
sp|Q08473|SQD_DROME  RNA-binding protein squid (Heterogeneou...    82   2e-15
sp|Q920Q6|MSI2H_MOUSE  RNA-binding protein Musashi homolog 2...    67   5e-11
sp|Q96DH6|MSI2H_HUMAN  RNA-binding protein Musashi homolog 2...    67   5e-11

>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
 Frame = +2

Query: 2   LEVPEHRLKNKKIDPKPAKPTK-EPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPF 178
           L+  EHRL  + IDPK A   K +P KKIFVGGL+P+ TEE+I+EYF Q+G +E+++LP 
Sbjct: 133 LDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 192

Query: 179 DTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSK 286
           D    KR+ +VF++F  ED  K  +  +   V GSK
Sbjct: 193 DPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSK 228


 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 22/82 (26%), Positives = 49/82 (59%)
 Frame = +2

Query: 53  AKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTE 232
           A   +E   K+FVGGLS D +++ +K+YF+++G V    +  D + G+ + + F+ F  +
Sbjct: 67  ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF-KD 125

Query: 233 DAAKNAIINEKQDVLGSKLVCP 298
            ++   ++++K+  L  +++ P
Sbjct: 126 SSSVEKVLDQKEHRLDGRVIDP 147

>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 355

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
 Frame = +2

Query: 2   LEVPEHRLKNKKIDPKPAKP--TKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLP 175
           ++  EH+L  K IDPK AK   TKEP KKIFVGGLSPD  EE+I+EYF  +G VES++LP
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214

Query: 176 FDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSK 286
            D    KR+ + F++F  E+  K  +  +  +V  SK
Sbjct: 215 MDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 251


 Score = 51.2 bits (121), Expect = 4e-06
 Identities = 24/73 (32%), Positives = 45/73 (61%)
 Frame = +2

Query: 80  KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIIN 259
           K+F+GGLS D T++ +K+YFS++G V    L  D   G+ + + F+ F  E  + + +++
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMD 156

Query: 260 EKQDVLGSKLVCP 298
           +K+  L  K++ P
Sbjct: 157 QKEHKLNGKVIDP 169

>sp|P17132|HNRPC_RAT Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP core
           protein C)
          Length = 158

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
 Frame = +2

Query: 2   LEVPEHRLKNKKIDPKPAKP--TKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLP 175
           ++  EH+L  K IDPK AK   TKEP KKIFVGGLSPD  EE+I+EYF  +G VES++LP
Sbjct: 7   MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 66

Query: 176 FDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSK 286
            D    KR+ + F++F  E+  K  +  +  +V  SK
Sbjct: 67  MDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 103

>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 353

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
 Frame = +2

Query: 2   LEVPEHRLKNKKIDPKPAKP--TKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLP 175
           ++  EH+L  K IDPK AK   TKEP KKIFVGGLSPD  EE+I+EYF  +G VES++LP
Sbjct: 153 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 212

Query: 176 FDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSK 286
            D    KR+ + F++F  E+  K  +  +  +V  SK
Sbjct: 213 MDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 249


 Score = 51.2 bits (121), Expect = 4e-06
 Identities = 24/73 (32%), Positives = 45/73 (61%)
 Frame = +2

Query: 80  KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIIN 259
           K+F+GGLS D T++ +K+YFS++G V    L  D   G+ + + F+ F  E  + + +++
Sbjct: 96  KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMD 154

Query: 260 EKQDVLGSKLVCP 298
           +K+  L  K++ P
Sbjct: 155 QKEHKLNGKVIDP 167

>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 355

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
 Frame = +2

Query: 2   LEVPEHRLKNKKIDPKPAKP--TKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLP 175
           ++  EH+L  K IDPK AK   TKEP KKIFVGGLSPD  EE+I+EYF  +G VES++LP
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214

Query: 176 FDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSK 286
            D    KR+ + F++F  E+  K  +  +  +V  SK
Sbjct: 215 MDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 251


 Score = 51.2 bits (121), Expect = 4e-06
 Identities = 24/73 (32%), Positives = 45/73 (61%)
 Frame = +2

Query: 80  KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIIN 259
           K+F+GGLS D T++ +K+YFS++G V    L  D   G+ + + F+ F  E  + + +++
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMD 156

Query: 260 EKQDVLGSKLVCP 298
           +K+  L  K++ P
Sbjct: 157 QKEHKLNGKVIDP 169

>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B) (APOBEC-1
           binding protein 1) (ABBP-1)
          Length = 331

 Score = 87.0 bits (214), Expect = 6e-17
 Identities = 44/97 (45%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
 Frame = +2

Query: 2   LEVPEHRLKNKKIDPKPAKPTK-EPNKKIFVGGLSPDV-TEEQIKEYFSQYGSVESVDLP 175
           L+  EHRL  + IDPK A   K +P KKIFVGGL+P+  TEE+I+EYF ++G +E+++LP
Sbjct: 126 LDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELP 185

Query: 176 FDTSKGKRKPYVFLSFTTEDAAKNAIINEKQDVLGSK 286
            D    KR+ +VF++F  E+  K  +  +   V GSK
Sbjct: 186 MDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSK 222


 Score = 50.1 bits (118), Expect = 8e-06
 Identities = 25/96 (26%), Positives = 53/96 (55%)
 Frame = +2

Query: 11  PEHRLKNKKIDPKPAKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSK 190
           P   ++    D   A   +E   K+FVGGLS D +++ +K+YF+++G V    +  D + 
Sbjct: 46  PRAGIRTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 105

Query: 191 GKRKPYVFLSFTTEDAAKNAIINEKQDVLGSKLVCP 298
           G+ + + F+ F  + A+   ++++K+  L  +++ P
Sbjct: 106 GRSRGFGFILF-KDAASVEKVLDQKEHRLDGRVIDP 140

>sp|P07029|HNRU2_HUMAN Heterogeneous nuclear ribonucleoprotein UP2
          Length = 225

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
 Frame = +2

Query: 32  KKIDPKPAKP--TKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKP 205
           K IDPK AK   TKEP KKIFVGGLSPD  EE+I+EYF  +G VES++LP D    KR+ 
Sbjct: 155 KVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRG 214

Query: 206 YVFLSFTTED 235
           + F++F  E+
Sbjct: 215 FCFITFNQEE 224

>sp|Q08473|SQD_DROME RNA-binding protein squid (Heterogeneous nuclear ribonucleoprotein
           40) (HNRNP 40)
          Length = 344

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 36/92 (39%), Positives = 61/92 (66%)
 Frame = +2

Query: 14  EHRLKNKKIDPKPAKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKG 193
           EH + +KK+DPK AK     + KIFVGGL+ ++++E+IK YF Q+G++  V++PFD  K 
Sbjct: 118 EHIINSKKVDPKKAKAR---HGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKS 174

Query: 194 KRKPYVFLSFTTEDAAKNAIINEKQDVLGSKL 289
           +RK + F++F +E    + +   KQ + G ++
Sbjct: 175 QRKGFCFITFDSEQVVTDLLKTPKQKIAGKEV 206


 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 25/82 (30%), Positives = 52/82 (63%)
 Frame = +2

Query: 53  AKPTKEPNKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTE 232
           A   ++ ++K+FVGGLS + TE++++++F +YG +ES+++  D   G+ + + F+ FT  
Sbjct: 48  ASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNT 107

Query: 233 DAAKNAIINEKQDVLGSKLVCP 298
           +A  + +    + ++ SK V P
Sbjct: 108 EAI-DKVSAADEHIINSKKVDP 128

>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 (Musashi-2)
          Length = 346

 Score = 67.4 bits (163), Expect = 5e-11
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
 Frame = +2

Query: 11  PEHRLKNKKIDPKPAKPTKEP------NKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDL 172
           P H L +K IDPK A P +         KKIFVGGLS +   E +K+YF Q+G VE   L
Sbjct: 82  PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141

Query: 173 PFDTSKGKRKPYVFLSFTTEDAAK 244
            FD +  + + + F++F  ED  +
Sbjct: 142 MFDKTTNRHRGFGFVTFENEDVVE 165


 Score = 40.0 bits (92), Expect = 0.008
 Identities = 18/73 (24%), Positives = 42/73 (57%)
 Frame = +2

Query: 80  KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIIN 259
           K+F+GGLS   + + +++YFS++G +    +  D +  + + + F++F  + A+ + ++ 
Sbjct: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF-ADPASVDKVLG 80

Query: 260 EKQDVLGSKLVCP 298
           +    L SK + P
Sbjct: 81  QPHHELDSKTIDP 93

>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 (Musashi-2)
          Length = 328

 Score = 67.4 bits (163), Expect = 5e-11
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
 Frame = +2

Query: 11  PEHRLKNKKIDPKPAKPTKEP------NKKIFVGGLSPDVTEEQIKEYFSQYGSVESVDL 172
           P H L +K IDPK A P +         KKIFVGGLS +   E +K+YF Q+G VE   L
Sbjct: 82  PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141

Query: 173 PFDTSKGKRKPYVFLSFTTEDAAK 244
            FD +  + + + F++F  ED  +
Sbjct: 142 MFDKTTNRHRGFGFVTFENEDVVE 165


 Score = 40.0 bits (92), Expect = 0.008
 Identities = 18/73 (24%), Positives = 42/73 (57%)
 Frame = +2

Query: 80  KIFVGGLSPDVTEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAIIN 259
           K+F+GGLS   + + +++YFS++G +    +  D +  + + + F++F  + A+ + ++ 
Sbjct: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF-ADPASVDKVLG 80

Query: 260 EKQDVLGSKLVCP 298
           +    L SK + P
Sbjct: 81  QPHHELDSKTIDP 93

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,565,011
Number of Sequences: 369166
Number of extensions: 1757531
Number of successful extensions: 5299
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5275
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00730

  1. Dr_sW_003_K01
  2. Dr_sW_019_A21
  3. Dr_sW_016_M06