Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_K01
(386 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q56989|HMUR_YERPE Hemin receptor precursor 29 3.8
sp|P32762|ALYS_BPHB3 Lytic amidase (N-acetylmuramoyl-L-alan... 28 4.9
sp|Q29467|I5P1_CANFA Type I inositol-1,4,5-trisphosphate 5-... 28 8.4
sp|P93318|M660_ARATH Hypothetical mitochondrial protein AtM... 28 8.4
>sp|Q56989|HMUR_YERPE Hemin receptor precursor
Length = 676
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 45 RIRSIRIKWQLGVLMAVGCTLPVLNITA--TSTRTGGRIHTIPTRII 179
R S R +W + +A+ CTLP+ A T+T+T + H+ T ++
Sbjct: 3 RSTSDRFRWS-SLSLAIACTLPLATQAADTTTTQTSSKKHSTDTMVV 48
>sp|P32762|ALYS_BPHB3 Lytic amidase (N-acetylmuramoyl-L-alanine amidase)
Length = 318
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 149 APRTGTRSCNIQNREGTPHCHKDPKLPFYSY 57
A TG R+ +QN E H KDP+L F+S+
Sbjct: 25 AHSTGNRNSTVQN-EADYHWRKDPELGFFSH 54
>sp|Q29467|I5P1_CANFA Type I inositol-1,4,5-trisphosphate 5-phosphatase (5PTase)
Length = 412
Score = 27.7 bits (60), Expect = 8.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 271 YLPSCNWSSRGRYVRLRW 218
Y P C WS +G +VR RW
Sbjct: 155 YFPECKWSRKG-FVRTRW 171
>sp|P93318|M660_ARATH Hypothetical mitochondrial protein AtMg00660 (ORF149)
Length = 149
Score = 27.7 bits (60), Expect = 8.4
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -1
Query: 236 LRTAEVAWGKHKDIRCNIPNNTRWDRMNTAPRTGTRSCNIQNREGTPHCHKDPKLP 69
L + W K K +RC+ P + PR R RE +PH D + P
Sbjct: 18 LMRKKALWSKGKRVRCHTP------CLPKVPRGRARRSGATTREQSPHRQGDRRRP 67
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,526,090
Number of Sequences: 369166
Number of extensions: 518788
Number of successful extensions: 1193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 68,354,980
effective HSP length: 95
effective length of database: 50,805,155
effective search space used: 1676570115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)