Planaria EST Database

DrC_00727

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00727
         (360 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P97046|LMRA_LACLC  Multidrug resistance ABC transporter A...    30   1.7  
sp|Q7T3Q2|CRIM1_BRARE  Cysteine-rich motor neuron 1 protein ...    29   2.9  
sp|P12021|MUCAP_PIG  Apomucin (Mucin core protein)                 28   4.9  
sp|O46547|SCNND_PANTR  Amiloride-sensitive sodium channel de...    28   4.9  
sp|P51172|SCNND_HUMAN  Amiloride-sensitive sodium channel de...    28   6.4  
sp|Q08683|APC5_YEAST  Anaphase promoting complex subunit 5         28   8.4  
sp|Q9D6X5|CT054_MOUSE  Protein C20orf54 homolog precursor          28   8.4  

>sp|P97046|LMRA_LACLC Multidrug resistance ABC transporter ATP-binding and permease
           protein
          Length = 590

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 178 PVQLFGQKAGW*HLDSLLNF 119
           P+  FGQK GW   DSL NF
Sbjct: 191 PIMTFGQKIGWTRQDSLANF 210

>sp|Q7T3Q2|CRIM1_BRARE Cysteine-rich motor neuron 1 protein precursor (CRIM-1)
          Length = 1027

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 102 KLGCTV-KFRSESKC-YQPAFCPNSCTGFLGEIHAVGTSW--GNPACHCRAGSE 251
           +LGC + + R +S     PA    SC    G  H  G SW  G   C+C AG E
Sbjct: 578 ELGCLICQCRDQSSSSVTPAVKLGSCLSMDGRRHENGQSWHDGCRDCYCHAGRE 631

>sp|P12021|MUCAP_PIG Apomucin (Mucin core protein)
          Length = 1150

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +3

Query: 108  GCTVKFRSESK--CYQPAFCPNSCTGFLGEIHAVGTSWGNPACHCRAGSEGPEVDCDGK 278
            G T    +E+K  C  P   P  C G LGE  + G  W    CH    +E   VDC  K
Sbjct: 908  GATEDQENENKTGCPAPLPPPPVCHGPLGEEKSPGDVW-TANCHKCTCTEAKTVDCKPK 965

>sp|O46547|SCNND_PANTR Amiloride-sensitive sodium channel delta-subunit (Epithelial Na+
           channel delta subunit) (Delta ENaC) (Nonvoltage-gated
           sodium channel 1 delta subunit) (SCNED) (Delta NaCH)
          Length = 638

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 189 EIHAVGTSWGNPACHCRAGSEGPEVD 266
           E+H +G+ +G    HC AG+EG EV+
Sbjct: 359 EVHRLGSPYG----HCTAGAEGVEVE 380

>sp|P51172|SCNND_HUMAN Amiloride-sensitive sodium channel delta-subunit (Epithelial Na+
           channel delta subunit) (Delta ENaC) (Nonvoltage-gated
           sodium channel 1 delta subunit) (SCNED) (Delta NaCH)
          Length = 638

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 189 EIHAVGTSWGNPACHCRAGSEGPEVD 266
           E+H +G+ +G    HC AG EG EV+
Sbjct: 359 EVHRLGSPYG----HCTAGGEGVEVE 380

>sp|Q08683|APC5_YEAST Anaphase promoting complex subunit 5
          Length = 685

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
 Frame = -1

Query: 234 NDMPDFPMMFLLHEFLQEI-----------LYNYLDRKLVGNI*IHF*ILLYSRA 103
           ND   FP++F+L ++L+ I           L+NY D K  GN   +F I L S A
Sbjct: 293 NDATKFPLIFIL-KYLEAIKENSYQTALDSLHNYFDYKSTGNSQNYFHISLLSLA 346

>sp|Q9D6X5|CT054_MOUSE Protein C20orf54 homolog precursor
          Length = 460

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 141 CYQPAFCPNSCTGFLGEIHAVGTSWG 218
           C+ P F PN    FLG +  +GT +G
Sbjct: 340 CFLPIFLPNRSLLFLGVLTVLGTGFG 365

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,152,550
Number of Sequences: 369166
Number of extensions: 680330
Number of successful extensions: 1502
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00727

  1. Dr_sW_018_P07
  2. Dr_sW_009_B23