Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_B23
(311 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P97046|LMRA_LACLC Multidrug resistance ABC transporter A... 30 1.7
sp|Q7T3Q2|CRIM1_BRARE Cysteine-rich motor neuron 1 protein ... 29 2.9
sp|P12021|MUCAP_PIG Apomucin (Mucin core protein) 28 5.0
sp|O46547|SCNND_PANTR Amiloride-sensitive sodium channel de... 28 5.0
sp|P51172|SCNND_HUMAN Amiloride-sensitive sodium channel de... 28 6.6
sp|Q08683|APC5_YEAST Anaphase promoting complex subunit 5 28 8.6
sp|Q9D6X5|CT054_MOUSE Protein C20orf54 homolog precursor 28 8.6
>sp|P97046|LMRA_LACLC Multidrug resistance ABC transporter ATP-binding and permease
protein
Length = 590
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 129 PVQLFGQKAGW*HLDSLLNF 70
P+ FGQK GW DSL NF
Sbjct: 191 PIMTFGQKIGWTRQDSLANF 210
>sp|Q7T3Q2|CRIM1_BRARE Cysteine-rich motor neuron 1 protein precursor (CRIM-1)
Length = 1027
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +2
Query: 53 KLGCTV-KFRSESKC-YQPAFCPNSCTGFLGEIHAVGTSW--GNPACHCRAGSE 202
+LGC + + R +S PA SC G H G SW G C+C AG E
Sbjct: 578 ELGCLICQCRDQSSSSVTPAVKLGSCLSMDGRRHENGQSWHDGCRDCYCHAGRE 631
>sp|P12021|MUCAP_PIG Apomucin (Mucin core protein)
Length = 1150
Score = 28.5 bits (62), Expect = 5.0
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +2
Query: 59 GCTVKFRSESK--CYQPAFCPNSCTGFLGEIHAVGTSWGNPACHCRAGSEGPEVDCDGK 229
G T +E+K C P P C G LGE + G W CH +E VDC K
Sbjct: 908 GATEDQENENKTGCPAPLPPPPVCHGPLGEEKSPGDVW-TANCHKCTCTEAKTVDCKPK 965
>sp|O46547|SCNND_PANTR Amiloride-sensitive sodium channel delta-subunit (Epithelial Na+
channel delta subunit) (Delta ENaC) (Nonvoltage-gated
sodium channel 1 delta subunit) (SCNED) (Delta NaCH)
Length = 638
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 140 EIHAVGTSWGNPACHCRAGSEGPEVD 217
E+H +G+ +G HC AG+EG EV+
Sbjct: 359 EVHRLGSPYG----HCTAGAEGVEVE 380
>sp|P51172|SCNND_HUMAN Amiloride-sensitive sodium channel delta-subunit (Epithelial Na+
channel delta subunit) (Delta ENaC) (Nonvoltage-gated
sodium channel 1 delta subunit) (SCNED) (Delta NaCH)
Length = 638
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 140 EIHAVGTSWGNPACHCRAGSEGPEVD 217
E+H +G+ +G HC AG EG EV+
Sbjct: 359 EVHRLGSPYG----HCTAGGEGVEVE 380
>sp|Q08683|APC5_YEAST Anaphase promoting complex subunit 5
Length = 685
Score = 27.7 bits (60), Expect = 8.6
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Frame = -1
Query: 185 NDMPDFPMMFLLHEFLQEI-----------LYNYLDRKLVGNI*IHF*ILLYSRA 54
ND FP++F+L ++L+ I L+NY D K GN +F I L S A
Sbjct: 293 NDATKFPLIFIL-KYLEAIKENSYQTALDSLHNYFDYKSTGNSQNYFHISLLSLA 346
>sp|Q9D6X5|CT054_MOUSE Protein C20orf54 homolog precursor
Length = 460
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 92 CYQPAFCPNSCTGFLGEIHAVGTSWG 169
C+ P F PN FLG + +GT +G
Sbjct: 340 CFLPIFLPNRSLLFLGVLTVLGTGFG 365
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,531,623
Number of Sequences: 369166
Number of extensions: 594260
Number of successful extensions: 1369
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)