Planaria EST Database

DrC_00719

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00719
         (200 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P30652|YOW6_CAEEL  Hypothetical protein ZK643.6 precursor       40   0.002
sp|Q09662|YS51_CAEEL  Hypothetical protein ZK673.1 in chromo...    33   0.27 
sp|Q19673|TYR3_CAEEL  Putative tyrosinase-like protein tyr-3...    32   0.35 
sp|Q29116|TENA_PIG  Tenascin precursor (TN) (Hexabrachion) (...    32   0.60 
sp|P24821|TENA_HUMAN  Tenascin precursor (TN) (Hexabrachion)...    30   1.3  
sp|Q20191|NAS13_CAEEL  Zinc metalloproteinase nas-13 precurs...    28   5.1  
sp|P10039|TENA_CHICK  Tenascin precursor (TN) (Hexabrachion)...    28   6.6  
sp|P59466|SYW_BUCBP  Tryptophanyl-tRNA synthetase (Tryptopha...    28   8.6  

>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
          Length = 180

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 24  CPKSCHFCGDCADSRPDCEVLKERGDCDKMDDRVCRKTC 140
           CPK+C+ C  C D+   C +   RG C K D    +K+C
Sbjct: 134 CPKTCNACNICEDANKMCPIWVPRGFCSKFDHDKVQKSC 172

>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
          Length = 154

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 14/53 (26%)
 Frame = +3

Query: 24  CPKSCHFCG--------DCADSRPDCEVLKERGDCDKM------DDRVCRKTC 140
           CPK+C FCG         C DS  +C   ++ G C           + C KTC
Sbjct: 95  CPKTCGFCGGGSTAAPVQCVDSSTNCANWEKNGFCSSTFYDCANKKQYCAKTC 147

>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
          Length = 683

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
 Frame = +3

Query: 21  KCPKSCHFC------GDCADSRPDCEVLKERGDC--DKMDDRVCRKTC 140
           +C  SC  C      G CAD   DC     RG+C  +K     CR++C
Sbjct: 607 QCKVSCGVCRPNYVYGPCADYHYDCAAWARRGECLKNKWMPENCRRSC 654

>sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
           (GMEM) (JI) (Miotendinous antigen)
           (Glioma-associated-extracellular matrix antigen) (GP
           150-225) (Tenascin-C) (TN-C) (P230)
          Length = 1746

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 21  KCPKSCHFCGDCADSRPDCEVLKERGDCDKM 113
           +CP  CH  G C D R +C+   E  DC ++
Sbjct: 376 RCPSDCHNRGRCLDGRCECDDGFEGEDCGEL 406


 Score = 30.8 bits (68), Expect = 1.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 21  KCPKSCHFCGDCADSRPDCEVLKERGDCDKM 113
           +CP  CH  G C   R +CE   +  DC +M
Sbjct: 438 RCPNDCHGRGRCVQGRCECEHGFQGYDCSEM 468


 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 21  KCPKSCHFCGDCADSRPDCEVLKERGDCDKMDDRVCRKTC 140
           +CP +CH  G C D +  C       DC ++    C   C
Sbjct: 189 ECPSNCHLRGQCVDGQCVCNEGFTGEDCSQL---ACPSDC 225

>sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
           (GMEM) (JI) (Miotendinous antigen)
           (Glioma-associated-extracellular matrix antigen) (GP
           150-225) (Tenascin-C) (TN-C)
          Length = 2201

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 21  KCPKSCHFCGDCADSRPDCEVLKERGDCDKMDDRVCRKTC-GH 146
           +CP  CH  G C D R +C+      DC ++    C   C GH
Sbjct: 376 RCPADCHNRGRCVDGRCECDDGFTGADCGELK---CPNGCSGH 415


 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 21  KCPKSCHFCGDCADSRPDCEVLKERGDCDKMDDRVCRKTC 140
           +CP  CH  G C + +  CE   +  DC  M    C   C
Sbjct: 438 RCPNDCHSRGRCVEGKCVCEQGFKGYDCSDMS---CPNDC 474

>sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precursor (Nematode astacin 13)
          Length = 527

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
 Frame = +3

Query: 48  GDCADSRPDCEVLKERGDCD-----KMDDRVCRKTCG 143
           G C D R DCE L   G C+     +     C  +CG
Sbjct: 443 GKCEDRRKDCEFLARAGHCESRFSIRFMTENCANSCG 479

>sp|P10039|TENA_CHICK Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
           (GMEM) (JI) (Miotendinous antigen)
           (Glioma-associated-extracellular matrix antigen) (GP
           150-225)
          Length = 1808

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 24  CPKSCHFCGDCADSRPDCEVLKERGDCDKMDDRVCRKTC 140
           CP +CH  G C D+   C+      DC ++   +C   C
Sbjct: 285 CPNNCHNRGRCVDNECVCDEGYTGEDCGEL---ICPNDC 320


 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +3

Query: 24  CPKSCHFCGDCADSRPDCEVLKERGDCDKMDDRVCRKTCGH 146
           CP  CH  G C D R  C       DC    +R C   C +
Sbjct: 533 CPNDCHQHGRCVDGRCVCHEGFTGEDC---RERSCPNDCNN 570

>sp|P59466|SYW_BUCBP Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
          Length = 333

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 177 YINILQKFIINVHKFFCKLCRPFCHSLLV 91
           YI +L+++I+  H F C  C    HSL V
Sbjct: 23  YIGVLREWILMQHDFTCFFCIADLHSLTV 51

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,087,532
Number of Sequences: 369166
Number of extensions: 392808
Number of successful extensions: 1544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 68,354,980
effective HSP length: 38
effective length of database: 61,335,050
effective search space used: 1717381400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00719

  1. Dr_sW_018_M07
  2. Dr_sW_015_E10