Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_M07
(200 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 40 0.002
sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromo... 33 0.27
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3... 32 0.35
sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (... 32 0.60
sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion)... 30 1.3
sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precurs... 28 5.1
sp|P10039|TENA_CHICK Tenascin precursor (TN) (Hexabrachion)... 28 6.6
sp|P59466|SYW_BUCBP Tryptophanyl-tRNA synthetase (Tryptopha... 28 8.6
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 39.7 bits (91), Expect = 0.002
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 24 CPKSCHFCGDCADSRPDCEVLKERGDCDKMDDRVCRKTC 140
CPK+C+ C C D+ C + RG C K D +K+C
Sbjct: 134 CPKTCNACNICEDANKMCPIWVPRGFCSKFDHDKVQKSC 172
>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
Length = 154
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 14/53 (26%)
Frame = +3
Query: 24 CPKSCHFCG--------DCADSRPDCEVLKERGDCDKM------DDRVCRKTC 140
CPK+C FCG C DS +C ++ G C + C KTC
Sbjct: 95 CPKTCGFCGGGSTAAPVQCVDSSTNCANWEKNGFCSSTFYDCANKKQYCAKTC 147
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
Length = 683
Score = 32.3 bits (72), Expect = 0.35
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Frame = +3
Query: 21 KCPKSCHFC------GDCADSRPDCEVLKERGDC--DKMDDRVCRKTC 140
+C SC C G CAD DC RG+C +K CR++C
Sbjct: 607 QCKVSCGVCRPNYVYGPCADYHYDCAAWARRGECLKNKWMPENCRRSC 654
>sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C) (P230)
Length = 1746
Score = 31.6 bits (70), Expect = 0.60
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 21 KCPKSCHFCGDCADSRPDCEVLKERGDCDKM 113
+CP CH G C D R +C+ E DC ++
Sbjct: 376 RCPSDCHNRGRCLDGRCECDDGFEGEDCGEL 406
Score = 30.8 bits (68), Expect = 1.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 21 KCPKSCHFCGDCADSRPDCEVLKERGDCDKM 113
+CP CH G C R +CE + DC +M
Sbjct: 438 RCPNDCHGRGRCVQGRCECEHGFQGYDCSEM 468
Score = 28.5 bits (62), Expect = 5.1
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +3
Query: 21 KCPKSCHFCGDCADSRPDCEVLKERGDCDKMDDRVCRKTC 140
+CP +CH G C D + C DC ++ C C
Sbjct: 189 ECPSNCHLRGQCVDGQCVCNEGFTGEDCSQL---ACPSDC 225
>sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C)
Length = 2201
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 21 KCPKSCHFCGDCADSRPDCEVLKERGDCDKMDDRVCRKTC-GH 146
+CP CH G C D R +C+ DC ++ C C GH
Sbjct: 376 RCPADCHNRGRCVDGRCECDDGFTGADCGELK---CPNGCSGH 415
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +3
Query: 21 KCPKSCHFCGDCADSRPDCEVLKERGDCDKMDDRVCRKTC 140
+CP CH G C + + CE + DC M C C
Sbjct: 438 RCPNDCHSRGRCVEGKCVCEQGFKGYDCSDMS---CPNDC 474
>sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precursor (Nematode astacin 13)
Length = 527
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Frame = +3
Query: 48 GDCADSRPDCEVLKERGDCD-----KMDDRVCRKTCG 143
G C D R DCE L G C+ + C +CG
Sbjct: 443 GKCEDRRKDCEFLARAGHCESRFSIRFMTENCANSCG 479
>sp|P10039|TENA_CHICK Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225)
Length = 1808
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 24 CPKSCHFCGDCADSRPDCEVLKERGDCDKMDDRVCRKTC 140
CP +CH G C D+ C+ DC ++ +C C
Sbjct: 285 CPNNCHNRGRCVDNECVCDEGYTGEDCGEL---ICPNDC 320
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +3
Query: 24 CPKSCHFCGDCADSRPDCEVLKERGDCDKMDDRVCRKTCGH 146
CP CH G C D R C DC +R C C +
Sbjct: 533 CPNDCHQHGRCVDGRCVCHEGFTGEDC---RERSCPNDCNN 570
>sp|P59466|SYW_BUCBP Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
Length = 333
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 177 YINILQKFIINVHKFFCKLCRPFCHSLLV 91
YI +L+++I+ H F C C HSL V
Sbjct: 23 YIGVLREWILMQHDFTCFFCIADLHSLTV 51
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,087,532
Number of Sequences: 369166
Number of extensions: 392808
Number of successful extensions: 1544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 68,354,980
effective HSP length: 38
effective length of database: 61,335,050
effective search space used: 1717381400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)