Planaria EST Database

DrC_00714

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00714
         (584 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q24251|ATP5H_DROME  ATP synthase D chain, mitochondrial         58   2e-08
sp|O75947|ATP5H_HUMAN  ATP synthase D chain, mitochondrial         57   3e-08
sp|Q9DCX2|ATP5H_MOUSE  ATP synthase D chain, mitochondrial         57   4e-08
sp|P31399|ATP5H_RAT  ATP synthase D chain, mitochondrial           56   6e-08
sp|P13620|ATP5H_BOVIN  ATP synthase D chain, mitochondrial         56   6e-08
sp|Q9FT52|ATPQ_ARATH  ATP synthase D chain, mitochondrial          47   3e-05
sp|O94390|ATP7_SCHPO  ATP synthase D chain, mitochondrial          47   3e-05
sp|P30902|ATP7_YEAST  ATP synthase D chain, mitochondrial          43   7e-04
sp|O13350|ATP7_KLULA  ATP synthase D chain, mitochondrial          42   9e-04
sp|Q7SI16|ATP7_NEUCR  ATP synthase D chain, mitochondrial          36   0.062

>sp|Q24251|ATP5H_DROME ATP synthase D chain, mitochondrial
          Length = 178

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 25/78 (32%), Positives = 45/78 (57%)
 Frame = +3

Query: 3   SKSAIDWTKIYQKLAPSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNL 182
           ++S+I+W+ + +++  +    F   KT+ D  V  +   P   P+IDW  Y+K++ +  L
Sbjct: 7   AQSSINWSALAERVPANQKSSFGAFKTKSDIYVRAVLANPECPPQIDWANYKKLVPVAGL 66

Query: 183 VDKMKTDYESFKVPEPKD 236
           VD  +  YE+ KVP P+D
Sbjct: 67  VDSFQKQYEALKVPYPQD 84

>sp|O75947|ATP5H_HUMAN ATP synthase D chain, mitochondrial
          Length = 161

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 32/143 (22%), Positives = 67/143 (46%)
 Frame = +3

Query: 15  IDWTKIYQKLAPSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVDKM 194
           IDW    + +  +   +   +K+  + + ++++ LP   P IDW YY+  +A   LVD  
Sbjct: 11  IDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVDDF 70

Query: 195 KTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTCMPG 374
           +  + + KVP P+D   +   +  +E +  K   E   +    I   E+ ++     +P 
Sbjct: 71  EKKFNALKVPVPED--KYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPF 128

Query: 375 ENEVTFEILHVYYPEHSAHESEF 443
           + ++T E L+  +PE    + ++
Sbjct: 129 D-QMTIEDLNEAFPETKLDKKKY 150

>sp|Q9DCX2|ATP5H_MOUSE ATP synthase D chain, mitochondrial
          Length = 161

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 33/143 (23%), Positives = 66/143 (46%)
 Frame = +3

Query: 15  IDWTKIYQKLAPSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVDKM 194
           IDW    + +  +   +   +K+  +    +++ L  + P IDW YYR  +A P LVD  
Sbjct: 11  IDWVSFVEVMPQNQKAIGNALKSWNETFHARLASLSEKPPAIDWAYYRANVAKPGLVDDF 70

Query: 195 KTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTCMPG 374
           +  Y + K+P P+D   +  ++  +E +  K   E        I   E+ L+     +P 
Sbjct: 71  EKKYNALKIPVPED--KYTALVDQEEKEDVKSCAEFVSGSQLRIQEYEKQLEKMRNIIPF 128

Query: 375 ENEVTFEILHVYYPEHSAHESEF 443
           + ++T + L+  +PE    + ++
Sbjct: 129 D-QMTIDDLNEIFPETKLDKKKY 150

>sp|P31399|ATP5H_RAT ATP synthase D chain, mitochondrial
          Length = 161

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 32/135 (23%), Positives = 63/135 (46%)
 Frame = +3

Query: 15  IDWTKIYQKLAPSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVDKM 194
           IDW    + +  +   +   +K+  +   T+++ L  + P IDW YYR  +  P LVD  
Sbjct: 11  IDWVSFVEIMPQNQKAIGNALKSWNETFHTRLASLSEKPPAIDWAYYRANVDKPGLVDDF 70

Query: 195 KTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTCMPG 374
           K  Y + K+P P+D   +  ++  +E +  K   +        +   E+ L+     +P 
Sbjct: 71  KNKYNALKIPVPED--KYTALVDAEEKEDVKNCAQFVTGSQARVREYEKQLEKIKNMIPF 128

Query: 375 ENEVTFEILHVYYPE 419
           + ++T + L+  +PE
Sbjct: 129 D-QMTIDDLNEVFPE 142

>sp|P13620|ATP5H_BOVIN ATP synthase D chain, mitochondrial
          Length = 161

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 34/143 (23%), Positives = 67/143 (46%)
 Frame = +3

Query: 15  IDWTKIYQKLAPSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVDKM 194
           IDW    + +  +   V   +K+  + + ++++ LP + P IDW YY+  +A   LVD  
Sbjct: 11  IDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDF 70

Query: 195 KTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTCMPG 374
           +  + + KVP P+D   +   +  +E +  K   E        I   E+ L+     +P 
Sbjct: 71  EKKFNALKVPIPED--KYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRNIIPF 128

Query: 375 ENEVTFEILHVYYPEHSAHESEF 443
           + ++T E L+  +PE    + ++
Sbjct: 129 D-QMTIEDLNEVFPETKLDKKKY 150

>sp|Q9FT52|ATPQ_ARATH ATP synthase D chain, mitochondrial
          Length = 168

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
 Frame = +3

Query: 15  IDWTKIYQKLAPSMGG-VFRDIKTRQDNIVTKISMLPSEKPK-IDWDYYRKIIALPNLVD 188
           IDW  + + L        F +++   D + T++    S++P+ IDWDYYRK I    +VD
Sbjct: 19  IDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIG-AGIVD 77

Query: 189 KMKTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLK 350
           K K  Y+S ++P+  D     +V    + K      E K+ + K +  SERL K
Sbjct: 78  KYKEAYDSIEIPKYVD-----KVTPEYKPKFDALLVELKEAEQKSLKESERLEK 126

>sp|O94390|ATP7_SCHPO ATP synthase D chain, mitochondrial
          Length = 175

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
 Frame = +3

Query: 12  AIDWTKIYQKLA--PSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLV 185
           AIDW  +  KL    +      + ++R    V K+  L  +   +D+  YR ++A   +V
Sbjct: 11  AIDWASVASKLKLDAATASAIANFRSRHAQAVAKLGTLREQATTVDFATYRSVLANKEIV 70

Query: 186 DKMKTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTC 365
           +++++  +SFK P   D N+ L+ +   E K ++  K++ ++    +      LK     
Sbjct: 71  NRIESSMKSFK-PVKIDLNSQLKAINAFEAKASEGAKKNVELVKAELQNLSATLKNIEQA 129

Query: 366 MPGENEVTFEILHVYYPE 419
            P E E+T E +    PE
Sbjct: 130 RPTE-EITIEDMKQAVPE 146

>sp|P30902|ATP7_YEAST ATP synthase D chain, mitochondrial
          Length = 174

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 2/144 (1%)
 Frame = +3

Query: 15  IDWTKIYQKL--APSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVD 188
           +DW K+   L    S        K R D    ++  L S+  ++D+ +YR ++   +++D
Sbjct: 11  LDWAKVISSLRITGSTATQLSSFKKRNDEARRQLLELQSQPTEVDFSHYRSVLKNTSVID 70

Query: 189 KMKTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTCM 368
           K+++  + +K P   D +  L+V++  E       KE++ +  K +   +  L    +  
Sbjct: 71  KIESYVKQYK-PVKIDASKQLQVIESFEKHAMTNAKETESLVSKELKDLQSTLDNIQSAR 129

Query: 369 PGENEVTFEILHVYYPEHSAHESE 440
           P + E+T + L    PE  A   E
Sbjct: 130 PFD-ELTVDDLTKIKPEIDAKVEE 152

>sp|O13350|ATP7_KLULA ATP synthase D chain, mitochondrial
          Length = 174

 Score = 42.4 bits (98), Expect = 9e-04
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
 Frame = +3

Query: 15  IDWTKIYQ--KLAPSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVD 188
           +DW K+    KL           K R D    ++  L S+   +D+ +YR ++    +VD
Sbjct: 11  LDWAKVISSLKLTGKTATQLSSFKKRNDEARRQLLELQSQPTSVDFSHYRSVLKNTEVVD 70

Query: 189 KMKTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLK 350
           K++  Y+S+K P   D +  L  ++  E +  +   E+    +K++A   + LK
Sbjct: 71  KIEQFYKSYK-PVSVDVSKQLSTIEAFESQAIENAAET----EKLVAQELKDLK 119

>sp|Q7SI16|ATP7_NEUCR ATP synthase D chain, mitochondrial
          Length = 173

 Score = 36.2 bits (82), Expect = 0.062
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
 Frame = +3

Query: 15  IDWTKIYQKLA--PSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVD 188
           +DW KI   L          +  K R D+   K+  L      +D+  YR  +    +V+
Sbjct: 10  VDWAKITTSLGLRGQTAASLQAFKKRNDDARRKLQQLSELPTTVDFAAYRSTLKNQAIVN 69

Query: 189 KMKTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTCM 368
           +++  + SFK P   D N  L+ ++  E +  K  + +K   D  +   E+ L    T  
Sbjct: 70  EIEKRFTSFK-PATYDVNRQLKAIEAFEVEAIKNAEATKTKVDLELKDLEKTLTNIETAR 128

Query: 369 PGENEVTFEI 398
           P +     E+
Sbjct: 129 PFDELTVDEV 138

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,428,426
Number of Sequences: 369166
Number of extensions: 1077018
Number of successful extensions: 3096
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3090
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00714

  1. Dr_sW_018_L12
  2. Dr_sW_003_D16