Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_D16
(581 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24251|ATP5H_DROME ATP synthase D chain, mitochondrial 59 9e-09
sp|O75947|ATP5H_HUMAN ATP synthase D chain, mitochondrial 57 3e-08
sp|Q9DCX2|ATP5H_MOUSE ATP synthase D chain, mitochondrial 57 4e-08
sp|P31399|ATP5H_RAT ATP synthase D chain, mitochondrial 56 6e-08
sp|P13620|ATP5H_BOVIN ATP synthase D chain, mitochondrial 56 6e-08
sp|Q9FT52|ATPQ_ARATH ATP synthase D chain, mitochondrial 47 3e-05
sp|O94390|ATP7_SCHPO ATP synthase D chain, mitochondrial 47 3e-05
sp|P30902|ATP7_YEAST ATP synthase D chain, mitochondrial 43 7e-04
sp|O13350|ATP7_KLULA ATP synthase D chain, mitochondrial 42 8e-04
sp|Q7SI16|ATP7_NEUCR ATP synthase D chain, mitochondrial 36 0.061
>sp|Q24251|ATP5H_DROME ATP synthase D chain, mitochondrial
Length = 178
Score = 58.9 bits (141), Expect = 9e-09
Identities = 26/77 (33%), Positives = 44/77 (57%)
Frame = +3
Query: 3 QSAIDWTKIYQKLAPSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLV 182
QS+I+W+ + +++ + F KT+ D V + P P+IDW Y+K++ + LV
Sbjct: 8 QSSINWSALAERVPANQKSSFGAFKTKSDIYVRAVLANPECPPQIDWANYKKLVPVAGLV 67
Query: 183 DKMKTDYESFKVPEPKD 233
D + YE+ KVP P+D
Sbjct: 68 DSFQKQYEALKVPYPQD 84
>sp|O75947|ATP5H_HUMAN ATP synthase D chain, mitochondrial
Length = 161
Score = 57.4 bits (137), Expect = 3e-08
Identities = 32/143 (22%), Positives = 67/143 (46%)
Frame = +3
Query: 12 IDWTKIYQKLAPSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVDKM 191
IDW + + + + +K+ + + ++++ LP P IDW YY+ +A LVD
Sbjct: 11 IDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVDDF 70
Query: 192 KTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTCMPG 371
+ + + KVP P+D + + +E + K E + I E+ ++ +P
Sbjct: 71 EKKFNALKVPVPED--KYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPF 128
Query: 372 ENEVTFEILHVYYPEHSAHESEF 440
+ ++T E L+ +PE + ++
Sbjct: 129 D-QMTIEDLNEAFPETKLDKKKY 150
>sp|Q9DCX2|ATP5H_MOUSE ATP synthase D chain, mitochondrial
Length = 161
Score = 56.6 bits (135), Expect = 4e-08
Identities = 33/143 (23%), Positives = 66/143 (46%)
Frame = +3
Query: 12 IDWTKIYQKLAPSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVDKM 191
IDW + + + + +K+ + +++ L + P IDW YYR +A P LVD
Sbjct: 11 IDWVSFVEVMPQNQKAIGNALKSWNETFHARLASLSEKPPAIDWAYYRANVAKPGLVDDF 70
Query: 192 KTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTCMPG 371
+ Y + K+P P+D + ++ +E + K E I E+ L+ +P
Sbjct: 71 EKKYNALKIPVPED--KYTALVDQEEKEDVKSCAEFVSGSQLRIQEYEKQLEKMRNIIPF 128
Query: 372 ENEVTFEILHVYYPEHSAHESEF 440
+ ++T + L+ +PE + ++
Sbjct: 129 D-QMTIDDLNEIFPETKLDKKKY 150
>sp|P31399|ATP5H_RAT ATP synthase D chain, mitochondrial
Length = 161
Score = 56.2 bits (134), Expect = 6e-08
Identities = 32/135 (23%), Positives = 63/135 (46%)
Frame = +3
Query: 12 IDWTKIYQKLAPSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVDKM 191
IDW + + + + +K+ + T+++ L + P IDW YYR + P LVD
Sbjct: 11 IDWVSFVEIMPQNQKAIGNALKSWNETFHTRLASLSEKPPAIDWAYYRANVDKPGLVDDF 70
Query: 192 KTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTCMPG 371
K Y + K+P P+D + ++ +E + K + + E+ L+ +P
Sbjct: 71 KNKYNALKIPVPED--KYTALVDAEEKEDVKNCAQFVTGSQARVREYEKQLEKIKNMIPF 128
Query: 372 ENEVTFEILHVYYPE 416
+ ++T + L+ +PE
Sbjct: 129 D-QMTIDDLNEVFPE 142
>sp|P13620|ATP5H_BOVIN ATP synthase D chain, mitochondrial
Length = 161
Score = 56.2 bits (134), Expect = 6e-08
Identities = 34/143 (23%), Positives = 67/143 (46%)
Frame = +3
Query: 12 IDWTKIYQKLAPSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVDKM 191
IDW + + + V +K+ + + ++++ LP + P IDW YY+ +A LVD
Sbjct: 11 IDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDF 70
Query: 192 KTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTCMPG 371
+ + + KVP P+D + + +E + K E I E+ L+ +P
Sbjct: 71 EKKFNALKVPIPED--KYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRNIIPF 128
Query: 372 ENEVTFEILHVYYPEHSAHESEF 440
+ ++T E L+ +PE + ++
Sbjct: 129 D-QMTIEDLNEVFPETKLDKKKY 150
>sp|Q9FT52|ATPQ_ARATH ATP synthase D chain, mitochondrial
Length = 168
Score = 47.4 bits (111), Expect = 3e-05
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Frame = +3
Query: 12 IDWTKIYQKLAPSMGG-VFRDIKTRQDNIVTKISMLPSEKPK-IDWDYYRKIIALPNLVD 185
IDW + + L F +++ D + T++ S++P+ IDWDYYRK I +VD
Sbjct: 19 IDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIG-AGIVD 77
Query: 186 KMKTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLK 347
K K Y+S ++P+ D +V + K E K+ + K + SERL K
Sbjct: 78 KYKEAYDSIEIPKYVD-----KVTPEYKPKFDALLVELKEAEQKSLKESERLEK 126
>sp|O94390|ATP7_SCHPO ATP synthase D chain, mitochondrial
Length = 175
Score = 47.4 bits (111), Expect = 3e-05
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Frame = +3
Query: 9 AIDWTKIYQKLA--PSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLV 182
AIDW + KL + + ++R V K+ L + +D+ YR ++A +V
Sbjct: 11 AIDWASVASKLKLDAATASAIANFRSRHAQAVAKLGTLREQATTVDFATYRSVLANKEIV 70
Query: 183 DKMKTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTC 362
+++++ +SFK P D N+ L+ + E K ++ K++ ++ + LK
Sbjct: 71 NRIESSMKSFK-PVKIDLNSQLKAINAFEAKASEGAKKNVELVKAELQNLSATLKNIEQA 129
Query: 363 MPGENEVTFEILHVYYPE 416
P E E+T E + PE
Sbjct: 130 RPTE-EITIEDMKQAVPE 146
>sp|P30902|ATP7_YEAST ATP synthase D chain, mitochondrial
Length = 174
Score = 42.7 bits (99), Expect = 7e-04
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 2/144 (1%)
Frame = +3
Query: 12 IDWTKIYQKL--APSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVD 185
+DW K+ L S K R D ++ L S+ ++D+ +YR ++ +++D
Sbjct: 11 LDWAKVISSLRITGSTATQLSSFKKRNDEARRQLLELQSQPTEVDFSHYRSVLKNTSVID 70
Query: 186 KMKTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTCM 365
K+++ + +K P D + L+V++ E KE++ + K + + L +
Sbjct: 71 KIESYVKQYK-PVKIDASKQLQVIESFEKHAMTNAKETESLVSKELKDLQSTLDNIQSAR 129
Query: 366 PGENEVTFEILHVYYPEHSAHESE 437
P + E+T + L PE A E
Sbjct: 130 PFD-ELTVDDLTKIKPEIDAKVEE 152
>sp|O13350|ATP7_KLULA ATP synthase D chain, mitochondrial
Length = 174
Score = 42.4 bits (98), Expect = 8e-04
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Frame = +3
Query: 12 IDWTKIYQ--KLAPSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVD 185
+DW K+ KL K R D ++ L S+ +D+ +YR ++ +VD
Sbjct: 11 LDWAKVISSLKLTGKTATQLSSFKKRNDEARRQLLELQSQPTSVDFSHYRSVLKNTEVVD 70
Query: 186 KMKTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLK 347
K++ Y+S+K P D + L ++ E + + E+ +K++A + LK
Sbjct: 71 KIEQFYKSYK-PVSVDVSKQLSTIEAFESQAIENAAET----EKLVAQELKDLK 119
>sp|Q7SI16|ATP7_NEUCR ATP synthase D chain, mitochondrial
Length = 173
Score = 36.2 bits (82), Expect = 0.061
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Frame = +3
Query: 12 IDWTKIYQKLA--PSMGGVFRDIKTRQDNIVTKISMLPSEKPKIDWDYYRKIIALPNLVD 185
+DW KI L + K R D+ K+ L +D+ YR + +V+
Sbjct: 10 VDWAKITTSLGLRGQTAASLQAFKKRNDDARRKLQQLSELPTTVDFAAYRSTLKNQAIVN 69
Query: 186 KMKTDYESFKVPEPKDNNNWLEVLKVDEDKLTKETKESKDIDDKIIAASERLLKVGNTCM 365
+++ + SFK P D N L+ ++ E + K + +K D + E+ L T
Sbjct: 70 EIEKRFTSFK-PATYDVNRQLKAIEAFEVEAIKNAEATKTKVDLELKDLEKTLTNIETAR 128
Query: 366 PGENEVTFEI 395
P + E+
Sbjct: 129 PFDELTVDEV 138
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,235,185
Number of Sequences: 369166
Number of extensions: 1073864
Number of successful extensions: 3088
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3082
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)