Planaria EST Database

DrC_00711

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00711
         (404 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49196|RS12_CAEEL  40S ribosomal protein S12                   114   1e-25
sp|P46405|RS12_PIG  40S ribosomal protein S12                     113   2e-25
sp|P80455|RS12_DROME  40S ribosomal protein S12                   112   2e-25
sp|Q9SMI3|RS12_CYAPA  40S ribosomal protein S12                   110   1e-24
sp|O13019|RS12_ORENI  40S ribosomal protein S12                   110   1e-24
sp|P63323|RS12_MOUSE  40S ribosomal protein S12 >gi|54039306...   109   2e-24
sp|P47840|RS12_XENLA  40S ribosomal protein S12                   109   2e-24
sp|P25398|RS12_HUMAN  40S ribosomal protein S12                   109   2e-24
sp|O14062|RS12A_SCHPO  40S ribosomal protein S12-A                100   8e-22
sp|O74322|RS12B_SCHPO  40S ribosomal protein S12-B                100   2e-21

>sp|P49196|RS12_CAEEL 40S ribosomal protein S12
          Length = 140

 Score =  114 bits (284), Expect = 1e-25
 Identities = 54/113 (47%), Positives = 77/113 (68%)
 Frame = +1

Query: 25  DSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEHNI 204
           +  L++VL+ A    GL+ G+H+T KA++ ++A  C+LA+NCD+  Y KL+E LC EH I
Sbjct: 23  EGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQI 82

Query: 205 PLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNSTNWEALLTE 363
           PL+KV + K +GEY GLCK DK+   RK V CSSAV++N   N     A+LT+
Sbjct: 83  PLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNW-GNEEQGRAILTD 134

>sp|P46405|RS12_PIG 40S ribosomal protein S12
          Length = 132

 Score =  113 bits (282), Expect = 2e-25
 Identities = 51/106 (48%), Positives = 75/106 (70%)
 Frame = +1

Query: 19  NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
           ++++ LQ VLK A+   GL+ GI +  KA++ ++A +C+LA NCD+  Y KL+EALC EH
Sbjct: 13  DVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEH 72

Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNS 336
            I L+KV++NKKLGE+ GLCK+D++  PRK V CS  V+ +    S
Sbjct: 73  QINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKES 118

>sp|P80455|RS12_DROME 40S ribosomal protein S12
          Length = 139

 Score =  112 bits (281), Expect = 2e-25
 Identities = 51/101 (50%), Positives = 76/101 (75%)
 Frame = +1

Query: 19  NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
           +I++ LQ VLK ++   GL  GIHQ  KA++ ++A++CILA++ D+ NY KL+ ALC EH
Sbjct: 20  DINTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEH 79

Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISN 321
            IPL++V+++KKLGE++GLCK+DK+  PRK   CS  VI +
Sbjct: 80  QIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKD 120

>sp|Q9SMI3|RS12_CYAPA 40S ribosomal protein S12
          Length = 136

 Score =  110 bits (275), Expect = 1e-24
 Identities = 53/119 (44%), Positives = 79/119 (66%)
 Frame = +1

Query: 19  NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
           ++ + L+ VLK A+ V GL  G+H+  KA++ + A +C+LA N ++  YT+L+EALC EH
Sbjct: 18  DVMTALKEVLKKAMVVDGLKRGLHECAKALDQRSAQLCVLAANVNEPAYTRLVEALCAEH 77

Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNSTNWEALLTEVKKQ 375
            I L+KV  NK+LGE+ GLCK+DK+   RK V CS AVI+     S   + L+  +KK+
Sbjct: 78  GINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLKKR 136

>sp|O13019|RS12_ORENI 40S ribosomal protein S12
          Length = 132

 Score =  110 bits (275), Expect = 1e-24
 Identities = 50/106 (47%), Positives = 74/106 (69%)
 Frame = +1

Query: 19  NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
           ++++ L  VLK A+   GL+ GI +  KA++ ++A +C+LA NCD+  Y KL+EALC EH
Sbjct: 13  DVNTALPEVLKTALIHDGLAPGIREAAKALDKRQAHLCVLAANCDEPMYVKLVEALCAEH 72

Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNS 336
            I L+KV++NKKLGE+ GLCK+D++  PRK V CS  V+ +    S
Sbjct: 73  QINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKES 118

>sp|P63323|RS12_MOUSE 40S ribosomal protein S12
 sp|P63324|RS12_RAT 40S ribosomal protein S12
          Length = 132

 Score =  109 bits (272), Expect = 2e-24
 Identities = 50/106 (47%), Positives = 74/106 (69%)
 Frame = +1

Query: 19  NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
           ++++ LQ VLK A+   GL+ GI +  KA++ ++A +C+LA NCD+  Y KL+EAL  EH
Sbjct: 13  DVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEH 72

Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNS 336
            I L+KV++NKKLGE+ GLCK+D++  PRK V CS  V+ +    S
Sbjct: 73  QINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKES 118

>sp|P47840|RS12_XENLA 40S ribosomal protein S12
          Length = 132

 Score =  109 bits (272), Expect = 2e-24
 Identities = 50/106 (47%), Positives = 74/106 (69%)
 Frame = +1

Query: 19  NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
           ++++ LQ VLK A+   GL+ GI +  KA++ ++A +C+LA NCD+  Y KL+EALC E 
Sbjct: 13  DVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEP 72

Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNS 336
            I L+KV++NKKLGE+ GLCK+D++  PRK V CS  V+ +    S
Sbjct: 73  QINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKES 118

>sp|P25398|RS12_HUMAN 40S ribosomal protein S12
          Length = 132

 Score =  109 bits (272), Expect = 2e-24
 Identities = 50/106 (47%), Positives = 74/106 (69%)
 Frame = +1

Query: 19  NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
           ++++ LQ VLK A+   GL+ GI +  KA++ ++A +C+ A NCD+  Y KL+EAL  EH
Sbjct: 13  DVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVQASNCDEPMYVKLVEALLAEH 72

Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNS 336
            I L+KV++NKKLGE+ GLCK+D++ NPRK V CS  V+ +    S
Sbjct: 73  QINLIKVDDNKKLGEWVGLCKIDREGNPRKVVGCSCVVVKDYGKES 118

>sp|O14062|RS12A_SCHPO 40S ribosomal protein S12-A
          Length = 145

 Score =  100 bits (250), Expect = 8e-22
 Identities = 49/116 (42%), Positives = 75/116 (64%)
 Frame = +1

Query: 10  EEKNIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALC 189
           E  +++  L+ VLK A+   GL+ GI + +KA++ ++A +C+L ++CD   Y KL+EALC
Sbjct: 25  ETVSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALC 84

Query: 190 KEHNIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNSTNWEALL 357
            E   PL+KV + K LGE+AGLC LD+D N RK V CS   +++   +S   + LL
Sbjct: 85  AESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKLL 140

>sp|O74322|RS12B_SCHPO 40S ribosomal protein S12-B
          Length = 148

 Score = 99.8 bits (247), Expect = 2e-21
 Identities = 48/114 (42%), Positives = 75/114 (65%)
 Frame = +1

Query: 19  NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
           +++  L+ VLK A+   GL+ GI + +KA++ ++A +C+L ++CD   Y KL+EALC E 
Sbjct: 31  SVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAES 90

Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNSTNWEALLT 360
             PL+KV + K LGE+AGLC LD+D N RK V CS   +++   +S   + LL+
Sbjct: 91  QTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTLLS 144

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,018,728
Number of Sequences: 369166
Number of extensions: 628470
Number of successful extensions: 2097
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2094
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00711

  1. Dr_sW_018_J06
  2. Dr_sW_005_G21