Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_J06
(404 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49196|RS12_CAEEL 40S ribosomal protein S12 114 1e-25
sp|P46405|RS12_PIG 40S ribosomal protein S12 113 2e-25
sp|P80455|RS12_DROME 40S ribosomal protein S12 112 2e-25
sp|Q9SMI3|RS12_CYAPA 40S ribosomal protein S12 110 1e-24
sp|O13019|RS12_ORENI 40S ribosomal protein S12 110 1e-24
sp|P63323|RS12_MOUSE 40S ribosomal protein S12 >gi|54039306... 109 2e-24
sp|P47840|RS12_XENLA 40S ribosomal protein S12 109 2e-24
sp|P25398|RS12_HUMAN 40S ribosomal protein S12 109 2e-24
sp|O14062|RS12A_SCHPO 40S ribosomal protein S12-A 100 8e-22
sp|O74322|RS12B_SCHPO 40S ribosomal protein S12-B 100 2e-21
>sp|P49196|RS12_CAEEL 40S ribosomal protein S12
Length = 140
Score = 114 bits (284), Expect = 1e-25
Identities = 54/113 (47%), Positives = 77/113 (68%)
Frame = +1
Query: 25 DSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEHNI 204
+ L++VL+ A GL+ G+H+T KA++ ++A C+LA+NCD+ Y KL+E LC EH I
Sbjct: 23 EGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQI 82
Query: 205 PLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNSTNWEALLTE 363
PL+KV + K +GEY GLCK DK+ RK V CSSAV++N N A+LT+
Sbjct: 83 PLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNW-GNEEQGRAILTD 134
>sp|P46405|RS12_PIG 40S ribosomal protein S12
Length = 132
Score = 113 bits (282), Expect = 2e-25
Identities = 51/106 (48%), Positives = 75/106 (70%)
Frame = +1
Query: 19 NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
++++ LQ VLK A+ GL+ GI + KA++ ++A +C+LA NCD+ Y KL+EALC EH
Sbjct: 13 DVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEH 72
Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNS 336
I L+KV++NKKLGE+ GLCK+D++ PRK V CS V+ + S
Sbjct: 73 QINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKES 118
>sp|P80455|RS12_DROME 40S ribosomal protein S12
Length = 139
Score = 112 bits (281), Expect = 2e-25
Identities = 51/101 (50%), Positives = 76/101 (75%)
Frame = +1
Query: 19 NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
+I++ LQ VLK ++ GL GIHQ KA++ ++A++CILA++ D+ NY KL+ ALC EH
Sbjct: 20 DINTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEH 79
Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISN 321
IPL++V+++KKLGE++GLCK+DK+ PRK CS VI +
Sbjct: 80 QIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKD 120
>sp|Q9SMI3|RS12_CYAPA 40S ribosomal protein S12
Length = 136
Score = 110 bits (275), Expect = 1e-24
Identities = 53/119 (44%), Positives = 79/119 (66%)
Frame = +1
Query: 19 NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
++ + L+ VLK A+ V GL G+H+ KA++ + A +C+LA N ++ YT+L+EALC EH
Sbjct: 18 DVMTALKEVLKKAMVVDGLKRGLHECAKALDQRSAQLCVLAANVNEPAYTRLVEALCAEH 77
Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNSTNWEALLTEVKKQ 375
I L+KV NK+LGE+ GLCK+DK+ RK V CS AVI+ S + L+ +KK+
Sbjct: 78 GINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLKKR 136
>sp|O13019|RS12_ORENI 40S ribosomal protein S12
Length = 132
Score = 110 bits (275), Expect = 1e-24
Identities = 50/106 (47%), Positives = 74/106 (69%)
Frame = +1
Query: 19 NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
++++ L VLK A+ GL+ GI + KA++ ++A +C+LA NCD+ Y KL+EALC EH
Sbjct: 13 DVNTALPEVLKTALIHDGLAPGIREAAKALDKRQAHLCVLAANCDEPMYVKLVEALCAEH 72
Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNS 336
I L+KV++NKKLGE+ GLCK+D++ PRK V CS V+ + S
Sbjct: 73 QINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKES 118
>sp|P63323|RS12_MOUSE 40S ribosomal protein S12
sp|P63324|RS12_RAT 40S ribosomal protein S12
Length = 132
Score = 109 bits (272), Expect = 2e-24
Identities = 50/106 (47%), Positives = 74/106 (69%)
Frame = +1
Query: 19 NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
++++ LQ VLK A+ GL+ GI + KA++ ++A +C+LA NCD+ Y KL+EAL EH
Sbjct: 13 DVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEH 72
Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNS 336
I L+KV++NKKLGE+ GLCK+D++ PRK V CS V+ + S
Sbjct: 73 QINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKES 118
>sp|P47840|RS12_XENLA 40S ribosomal protein S12
Length = 132
Score = 109 bits (272), Expect = 2e-24
Identities = 50/106 (47%), Positives = 74/106 (69%)
Frame = +1
Query: 19 NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
++++ LQ VLK A+ GL+ GI + KA++ ++A +C+LA NCD+ Y KL+EALC E
Sbjct: 13 DVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEP 72
Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNS 336
I L+KV++NKKLGE+ GLCK+D++ PRK V CS V+ + S
Sbjct: 73 QINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKES 118
>sp|P25398|RS12_HUMAN 40S ribosomal protein S12
Length = 132
Score = 109 bits (272), Expect = 2e-24
Identities = 50/106 (47%), Positives = 74/106 (69%)
Frame = +1
Query: 19 NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
++++ LQ VLK A+ GL+ GI + KA++ ++A +C+ A NCD+ Y KL+EAL EH
Sbjct: 13 DVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVQASNCDEPMYVKLVEALLAEH 72
Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNS 336
I L+KV++NKKLGE+ GLCK+D++ NPRK V CS V+ + S
Sbjct: 73 QINLIKVDDNKKLGEWVGLCKIDREGNPRKVVGCSCVVVKDYGKES 118
>sp|O14062|RS12A_SCHPO 40S ribosomal protein S12-A
Length = 145
Score = 100 bits (250), Expect = 8e-22
Identities = 49/116 (42%), Positives = 75/116 (64%)
Frame = +1
Query: 10 EEKNIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALC 189
E +++ L+ VLK A+ GL+ GI + +KA++ ++A +C+L ++CD Y KL+EALC
Sbjct: 25 ETVSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALC 84
Query: 190 KEHNIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNSTNWEALL 357
E PL+KV + K LGE+AGLC LD+D N RK V CS +++ +S + LL
Sbjct: 85 AESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKLL 140
>sp|O74322|RS12B_SCHPO 40S ribosomal protein S12-B
Length = 148
Score = 99.8 bits (247), Expect = 2e-21
Identities = 48/114 (42%), Positives = 75/114 (65%)
Frame = +1
Query: 19 NIDSILQSVLKDAVSVRGLSCGIHQTTKAIESQKALMCILAKNCDDANYTKLIEALCKEH 198
+++ L+ VLK A+ GL+ GI + +KA++ ++A +C+L ++CD Y KL+EALC E
Sbjct: 31 SVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAES 90
Query: 199 NIPLLKVENNKKLGEYAGLCKLDKDLNPRKTVSCSSAVISNIPNNSTNWEALLT 360
PL+KV + K LGE+AGLC LD+D N RK V CS +++ +S + LL+
Sbjct: 91 QTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTLLS 144
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,018,728
Number of Sequences: 369166
Number of extensions: 628470
Number of successful extensions: 2097
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2094
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)