• TOP
• EST
• Cluster

Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00704
         (220 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R332|NUPL1_MOUSE  Nucleoporin p58/p45 (Nucleoporin-like...    30   2.2  
sp|Q7N6R1|6PGL_PHOLL  6-phosphogluconolactonase (6-P-glucono...    28   5.0  

>sp|Q8R332|NUPL1_MOUSE Nucleoporin p58/p45 (Nucleoporin-like protein 1)
          Length = 587

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = -2

Query: 165 TTLTFFAGLSLNDNRCGISA*IFDRGTSASSGIRYQSLLELRLLTVA 25
           TT T   GLSL     G+   +F  G +A+SG+  Q+ L L L T A
Sbjct: 149 TTTTASTGLSLGGALAGLGGSLFQSGNTATSGLG-QNALSLSLGTTA 194

>sp|Q7N6R1|6PGL_PHOLL 6-phosphogluconolactonase (6-P-gluconolactonase)
          Length = 328

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 88  DIGIIGHKVSVVVGIKATHSCN 23
           D GI+G  V V+ G++A HS N
Sbjct: 112 DQGIVGEPVQVIAGLQAPHSAN 133

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,264,370
Number of Sequences: 369166
Number of extensions: 372479
Number of successful extensions: 640
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 68,354,980
effective HSP length: 44
effective length of database: 60,226,640
effective search space used: 1686345920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_018_G16
2. Dr_sW_018_H15