Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_G16
(220 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8R332|NUPL1_MOUSE Nucleoporin p58/p45 (Nucleoporin-like... 30 2.2
sp|Q7N6R1|6PGL_PHOLL 6-phosphogluconolactonase (6-P-glucono... 28 5.0
>sp|Q8R332|NUPL1_MOUSE Nucleoporin p58/p45 (Nucleoporin-like protein 1)
Length = 587
Score = 29.6 bits (65), Expect = 2.2
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -2
Query: 165 TTLTFFAGLSLNDNRCGISA*IFDRGTSASSGIRYQSLLELRLLTVA 25
TT T GLSL G+ +F G +A+SG+ Q+ L L L T A
Sbjct: 149 TTTTASTGLSLGGALAGLGGSLFQSGNTATSGLG-QNALSLSLGTTA 194
>sp|Q7N6R1|6PGL_PHOLL 6-phosphogluconolactonase (6-P-gluconolactonase)
Length = 328
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 88 DIGIIGHKVSVVVGIKATHSCN 23
D GI+G V V+ G++A HS N
Sbjct: 112 DQGIVGEPVQVIAGLQAPHSAN 133
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,264,370
Number of Sequences: 369166
Number of extensions: 372479
Number of successful extensions: 640
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 68,354,980
effective HSP length: 44
effective length of database: 60,226,640
effective search space used: 1686345920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)