DrC_00702
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00702 (892 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoprotei... 177 5e-44 sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoprotei... 177 5e-44 sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotei... 175 2e-43 sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein ... 173 7e-43 sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotei... 172 9e-43 sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotei... 169 7e-42 sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotei... 168 2e-41 sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoprotei... 168 2e-41 sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotei... 167 3e-41 sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotei... 167 5e-41
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP B1) Length = 353 Score = 177 bits (448), Expect = 5e-44 Identities = 100/223 (44%), Positives = 135/223 (60%), Gaps = 1/223 (0%) Frame = +1 Query: 1 QWGELVDVVVMRMGGKNGKSRGFGFVTYKDPDMVDAAQASRPHIIDDRTVETKRAMPRDE 180 QWG+L D VVMR +SRGFGFVT+ VDAA A+RPH ID R VE KRA+ R+E Sbjct: 43 QWGKLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREE 101 Query: 181 ANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYD 360 + +H+TVKKLFVG +K++ LRDYF ++G I EIIT R++G+ RGFGFVT+D Sbjct: 102 SGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 161 Query: 361 DYDPVDKILLLKPHYIDNKRCEVKKALSKEEARSLKAKESMSTIGKSKFPAMSQSNGGMM 540 D+DPVDKI+L K H I+ EV+KALS++E + +++ S G+ S GG Sbjct: 162 DHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS----GRGGNFGFGDSRGGGG 217 Query: 541 GFMGDMRNDISNRYDNFGY-QDYDDRFGRYPNQGYSGGPVRGN 666 F ++ D +G + + D + GY GGP GN Sbjct: 218 NFGPGPGSNFRGGSDGYGSGRGFGDGY-----NGYGGGPGGGN 255
Score = 72.0 bits (175), Expect = 2e-12
Identities = 32/82 (39%), Positives = 52/82 (63%)
Frame = +1
Query: 211 KKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYDDYDPVDKILL 390
+KLF+G L E + LR+Y+ Q+G +T+C ++ + SRGFGFVT+ VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 391 LKPHYIDNKRCEVKKALSKEEA 456
+PH ID + E K+A+++EE+
Sbjct: 81 ARPHSIDGRVVEPKRAVAREES 102
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP B1) Length = 341 Score = 177 bits (448), Expect = 5e-44 Identities = 100/223 (44%), Positives = 135/223 (60%), Gaps = 1/223 (0%) Frame = +1 Query: 1 QWGELVDVVVMRMGGKNGKSRGFGFVTYKDPDMVDAAQASRPHIIDDRTVETKRAMPRDE 180 QWG+L D VVMR +SRGFGFVT+ VDAA A+RPH ID R VE KRA+ R+E Sbjct: 31 QWGKLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREE 89 Query: 181 ANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYD 360 + +H+TVKKLFVG +K++ LRDYF ++G I EIIT R++G+ RGFGFVT+D Sbjct: 90 SGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 149 Query: 361 DYDPVDKILLLKPHYIDNKRCEVKKALSKEEARSLKAKESMSTIGKSKFPAMSQSNGGMM 540 D+DPVDKI+L K H I+ EV+KALS++E + +++ S G+ S GG Sbjct: 150 DHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS----GRGGNFGFGDSRGGGG 205 Query: 541 GFMGDMRNDISNRYDNFGY-QDYDDRFGRYPNQGYSGGPVRGN 666 F ++ D +G + + D + GY GGP GN Sbjct: 206 NFGPGPGSNFRGGSDGYGSGRGFGDGY-----NGYGGGPGGGN 243
Score = 72.0 bits (175), Expect = 2e-12
Identities = 32/82 (39%), Positives = 52/82 (63%)
Frame = +1
Query: 211 KKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYDDYDPVDKILL 390
+KLF+G L E + LR+Y+ Q+G +T+C ++ + SRGFGFVT+ VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 391 LKPHYIDNKRCEVKKALSKEEA 456
+PH ID + E K+A+++EE+
Sbjct: 69 ARPHSIDGRVVEPKRAVAREES 90
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 320 Score = 175 bits (443), Expect = 2e-43 Identities = 104/257 (40%), Positives = 141/257 (54%), Gaps = 25/257 (9%) Frame = +1 Query: 1 QWGELVDVVVMRMGGKNGKSRGFGFVTYKDPDMVDAAQASRPHIIDDRTVETKRAMPRDE 180 QWG L D VVMR +SRGFGFVTY + VDAA +RPH +D R VE KRA+ R++ Sbjct: 36 QWGTLTDCVVMR-DPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 94 Query: 181 ANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYD 360 + +H+TVKK+FVG +K++ LRDYF Q+G I EI+T R +G+ RGF FVT+D Sbjct: 95 SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 154 Query: 361 DYDPVDKILLLKPHYIDNKRCEVKKALSKEE----ARSLKAKESMSTIGKSKFPAMSQSN 528 D+D VDKI++ K H ++ CEV+KALSK+E + S + + G + ++ Sbjct: 155 DHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGND 214 Query: 529 -------------------GGMMGFMGDMRNDISNRYDNFGYQDYDDRFGRYPNQGYSGG 651 GG G GD N N NFG + FG Y NQ + G Sbjct: 215 NFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFG 274 Query: 652 PVR-GNMSYRNQ-PYSG 696 P++ GN R+ PY G Sbjct: 275 PMKGGNFGGRSSGPYGG 291
Score = 75.1 bits (183), Expect = 2e-13
Identities = 42/149 (28%), Positives = 77/149 (51%)
Frame = +1
Query: 178 EANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTY 357
++ S + ++KLF+G L E + LR +F Q+G +T+C ++ T SRGFGFVTY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 358 DDYDPVDKILLLKPHYIDNKRCEVKKALSKEEARSLKAKESMSTIGKSKFPAMSQSNGGM 537
+ VD + +PH +D + E K+A+S+E+++ A ++ I
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKI--------------- 107
Query: 538 MGFMGDMRNDISNRYDNFGYQDYDDRFGR 624
F+G ++ D + +DY +++G+
Sbjct: 108 --FVGGIKEDTEEHH----LRDYFEQYGK 130
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP) Length = 320 Score = 173 bits (438), Expect = 7e-43 Identities = 103/257 (40%), Positives = 140/257 (54%), Gaps = 25/257 (9%) Frame = +1 Query: 1 QWGELVDVVVMRMGGKNGKSRGFGFVTYKDPDMVDAAQASRPHIIDDRTVETKRAMPRDE 180 QWG L D VVMR +SRGFGFVTY + VDAA +RPH +D R VE KRA+ R++ Sbjct: 36 QWGTLTDCVVMR-DPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 94 Query: 181 ANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYD 360 + +H+TVKK+FVG +K++ LRDYF Q+G I EI+T R +G+ RGF FVT+D Sbjct: 95 SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 154 Query: 361 DYDPVDKILLLKPHYIDNKRCEVKKALSKEE----ARSLKAKESMSTIGKSKFPAMSQSN 528 D+D VDKI++ K H ++ CEV+KAL K+E + S + + G + ++ Sbjct: 155 DHDSVDKIVIQKYHTVNGHNCEVRKALCKQEMASASSSQRGRSGSGNFGGGRGGGFGGND 214 Query: 529 -------------------GGMMGFMGDMRNDISNRYDNFGYQDYDDRFGRYPNQGYSGG 651 GG G GD N N NFG + FG Y NQ + G Sbjct: 215 NFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFG 274 Query: 652 PVR-GNMSYRNQ-PYSG 696 P++ GN R+ PY G Sbjct: 275 PMKGGNFGGRSSGPYGG 291
Score = 75.1 bits (183), Expect = 2e-13
Identities = 42/149 (28%), Positives = 77/149 (51%)
Frame = +1
Query: 178 EANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTY 357
++ S + ++KLF+G L E + LR +F Q+G +T+C ++ T SRGFGFVTY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 358 DDYDPVDKILLLKPHYIDNKRCEVKKALSKEEARSLKAKESMSTIGKSKFPAMSQSNGGM 537
+ VD + +PH +D + E K+A+S+E+++ A ++ I
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKI--------------- 107
Query: 538 MGFMGDMRNDISNRYDNFGYQDYDDRFGR 624
F+G ++ D + +DY +++G+
Sbjct: 108 --FVGGIKEDTEEHH----LRDYFEQYGK 130
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 320 Score = 172 bits (437), Expect = 9e-43 Identities = 103/257 (40%), Positives = 141/257 (54%), Gaps = 25/257 (9%) Frame = +1 Query: 1 QWGELVDVVVMRMGGKNGKSRGFGFVTYKDPDMVDAAQASRPHIIDDRTVETKRAMPRDE 180 QWG L D VVMR +SRGFGFVTY + VDAA +RPH +D R VE KRA+ R++ Sbjct: 36 QWGTLTDCVVMR-DPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSRED 94 Query: 181 ANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYD 360 + +H+TVKK+FVG +K++ LRDYF Q+G I EI+T R +G+ RGF FVT+D Sbjct: 95 SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 154 Query: 361 DYDPVDKILLLKPHYIDNKRCEVKKALSKEE----ARSLKAKESMSTIGKSKFPAMSQSN 528 D++ VDKI++ K H ++ CEV+KALSK+E + S + + G + ++ Sbjct: 155 DHNSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGND 214 Query: 529 -------------------GGMMGFMGDMRNDISNRYDNFGYQDYDDRFGRYPNQGYSGG 651 GG G GD N N NFG + FG Y NQ + G Sbjct: 215 NFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFG 274 Query: 652 PVR-GNMSYRN-QPYSG 696 P++ GN R+ PY G Sbjct: 275 PMKGGNFGGRSLGPYGG 291
Score = 75.1 bits (183), Expect = 2e-13
Identities = 42/149 (28%), Positives = 77/149 (51%)
Frame = +1
Query: 178 EANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTY 357
++ S + ++KLF+G L E + LR +F Q+G +T+C ++ T SRGFGFVTY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 358 DDYDPVDKILLLKPHYIDNKRCEVKKALSKEEARSLKAKESMSTIGKSKFPAMSQSNGGM 537
+ VD + +PH +D + E K+A+S+E+++ A ++ I
Sbjct: 63 ATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKI--------------- 107
Query: 538 MGFMGDMRNDISNRYDNFGYQDYDDRFGR 624
F+G ++ D + +DY +++G+
Sbjct: 108 --FVGGIKEDTEEHH----LRDYFEQYGK 130
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 (hnRNP A2(A)) Length = 346 Score = 169 bits (429), Expect = 7e-42 Identities = 100/236 (42%), Positives = 132/236 (55%), Gaps = 4/236 (1%) Frame = +1 Query: 1 QWGELVDVVVMRMGGKNGKSRGFGFVTYKDPDMVDAAQASRPHIIDDRTVETKRAMPRDE 180 QWG L D VVMR +SRGFGFVT+ + VDAA A+RPH ID R VE KRA+ R+E Sbjct: 31 QWGTLTDCVVMRDPASK-RSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVEPKRAVAREE 89 Query: 181 ANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYD 360 + +H+TVKKLFVG +K++ LR+YF ++G I EIIT +++G+ RGF FVT+D Sbjct: 90 SAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFD 149 Query: 361 DYDPVDKILLLKPHYIDNKRCEVKKALSKEEARSLKAKESMSTIGKSKFPAMSQSNGGMM 540 D+DPVDKI+L K H I+ EV+KALSK+E Sbjct: 150 DHDPVDKIVLQKYHTINGHNAEVRKALSKQE----------------------------- 180 Query: 541 GFMGDMRNDISNRYDNFGYQDY--DDRFGRYPNQGYSGGP--VRGNMSYRNQPYSG 696 M D++N +NR NFG+ D FG P + GG G Y + Y+G Sbjct: 181 --MQDVQNTRNNRGGNFGFGDSRGGGNFGSGPGGNFRGGSDGYGGGRGYGDNGYNG 234
Score = 72.0 bits (175), Expect = 2e-12
Identities = 32/82 (39%), Positives = 53/82 (64%)
Frame = +1
Query: 211 KKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYDDYDPVDKILL 390
+KLF+G L E + LR+Y+ Q+G +T+C ++ + SRGFGFVT+ + VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
Query: 391 LKPHYIDNKRCEVKKALSKEEA 456
+PH ID + E K+A+++EE+
Sbjct: 69 TRPHTIDGRVVEPKRAVAREES 90
Score = 30.0 bits (66), Expect = 9.0
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Frame = +1
Query: 529 GGMMGFMGDMRNDISNRYDNFGYQDYD-----DRFGRYPNQGYSGGPVR------GNMSY 675
GG G+ G+ YDN+G +Y + FG Y Q + GP++ GN S
Sbjct: 259 GGGAGY-GNQGGGYGGGYDNYGGGNYGGGGNYNDFGNYNQQSSNYGPMKSGGNFGGNRSM 317
Query: 676 RNQPYSG 696
PY G
Sbjct: 318 GGGPYGG 324
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core protein A1-A) (PEN repeat clone P9) Length = 365 Score = 168 bits (426), Expect = 2e-41 Identities = 109/285 (38%), Positives = 142/285 (49%), Gaps = 53/285 (18%) Frame = +1 Query: 1 QWGELVDVVVMRMGGKNGKSRGFGFVTYKDPDMVDAAQASRPHIIDDRTVETKRAMPRDE 180 +WG +VDVVVM+ + +SRGFGF+TY M+D AQ SRPH ID R VE KRA+PR + Sbjct: 53 KWGNIVDVVVMK-DPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQD 111 Query: 181 ANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYD 360 +S + TVKKLFVGALK + +RDYF FGNI + I+ +ETG+ RGF FV +D Sbjct: 112 IDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFD 171 Query: 361 DYDPVDKILLLKPHYIDNKRCEVKKALSKEE-------------ARSLKAKESM------ 483 DYDPVDK++L K H ++ K +VKKAL K+ R+ + +M Sbjct: 172 DYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGGGGGRGGPGGRAGGNRGNMGGGNYG 231 Query: 484 ----------------------STIGKSKFPAMSQSNGGMMGFMGDMRN----DISNRYD 585 G + F GG G N D N Sbjct: 232 NQNGGGNWNNGGNNWGNNRGGNDNWGNNSFGGGGGGGGGYGGGNNSWGNNNPWDNGNGGG 291 Query: 586 NFG-----YQDYDDRFGRYPNQGYSGGPVRGNMSYRN---QPYSG 696 NFG + + + FG Y Q Y GGP RG ++ N QPY G Sbjct: 292 NFGGGGNNWNNGGNDFGGY-QQNYGGGPQRGGGNFNNNRMQPYQG 335
Score = 65.1 bits (157), Expect = 3e-10
Identities = 42/151 (27%), Positives = 73/151 (48%)
Frame = +1
Query: 169 PRDEANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGF 348
P+D E HM +KLF+G L ++L+ +F ++GNI + ++ T SRGFGF
Sbjct: 20 PQDSITEPE-HM--RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGF 76
Query: 349 VTYDDYDPVDKILLLKPHYIDNKRCEVKKALSKEEARSLKAKESMSTIGKSKFPAMSQSN 528
+TY +D+ +PH ID + E K+A+ +++ S A ++ +
Sbjct: 77 ITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKL------------ 124
Query: 529 GGMMGFMGDMRNDISNRYDNFGYQDYDDRFG 621
F+G +++D +D +DY FG
Sbjct: 125 -----FVGALKDD----HDEQSIRDYFQHFG 146
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 168 bits (425), Expect = 2e-41 Identities = 96/229 (41%), Positives = 136/229 (59%) Frame = +1 Query: 1 QWGELVDVVVMRMGGKNGKSRGFGFVTYKDPDMVDAAQASRPHIIDDRTVETKRAMPRDE 180 QWG L D VVMR + +SRGFGFVTY D VDAA +RPH +D R VE KRA+ R++ Sbjct: 36 QWGTLTDCVVMR-DPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSRED 94 Query: 181 ANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYD 360 ++ +H+TVKK+FVG +K++ D LR+YF Q+G I EI+T R +G+ RGF FVT++ Sbjct: 95 SSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFE 154 Query: 361 DYDPVDKILLLKPHYIDNKRCEVKKALSKEEARSLKAKESMSTIGKSKFPAMSQSNGGMM 540 D+D VDKI++ K H ++N +V+KALSK+E M+++ S+ N G Sbjct: 155 DHDSVDKIVIQKYHTVNNHNSQVRKALSKQE---------MASVSGSQRERGGSGNYGSR 205 Query: 541 GFMGDMRNDISNRYDNFGYQDYDDRFGRYPNQGYSGGPVRGNMSYRNQP 687 G G+ ++ R NFG G + N+GY G G+ QP Sbjct: 206 GGFGN--DNFGGRGGNFGGNRGGG--GGFGNRGYGGDGYNGDGQLWWQP 250
Score = 74.3 bits (181), Expect = 4e-13
Identities = 33/83 (39%), Positives = 54/83 (65%)
Frame = +1
Query: 208 VKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYDDYDPVDKIL 387
++KLF+G L E + LR++F Q+G +T+C ++ + SRGFGFVTY D VD +
Sbjct: 13 LRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAM 72
Query: 388 LLKPHYIDNKRCEVKKALSKEEA 456
+PH +D + E K+A+S+E++
Sbjct: 73 TARPHKVDGRVVEPKRAVSREDS 95
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 (hnRNP A2(B)) Length = 358 Score = 167 bits (424), Expect = 3e-41 Identities = 95/219 (43%), Positives = 128/219 (58%), Gaps = 2/219 (0%) Frame = +1 Query: 1 QWGELVDVVVMRMGGKNGKSRGFGFVTYKDPDMVDAAQASRPHIIDDRTVETKRAMPRDE 180 QWG+L D VVMR +SRGFGFVT+ + VDAA ++RPH ID R VE KRA+ R+E Sbjct: 31 QWGQLTDCVVMRDPASK-RSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREE 89 Query: 181 ANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYD 360 + +H+TVKKLFVG +K++ LR+YF ++G I EIIT +++G+ RGFGFVT++ Sbjct: 90 SAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFN 149 Query: 361 DYDPVDKILLLKPHYIDNKRCEVKKALSKEEARSLKAKESMSTIGKSKFPAMSQSNGGMM 540 D+DPVDKI+L K H I+ EV+KALSK+E Sbjct: 150 DHDPVDKIVLQKYHTINGHNAEVRKALSKQE----------------------------- 180 Query: 541 GFMGDMRNDISNRYDNFGYQDY--DDRFGRYPNQGYSGG 651 M D++N +NR NFG+ D FG P + GG Sbjct: 181 --MQDVQNTRNNRGGNFGFGDSRGGGNFGSGPGGNFRGG 217
Score = 70.1 bits (170), Expect = 8e-12
Identities = 31/82 (37%), Positives = 53/82 (64%)
Frame = +1
Query: 211 KKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYDDYDPVDKILL 390
+KLF+G L E + LR+++ Q+G +T+C ++ + SRGFGFVT+ + VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 391 LKPHYIDNKRCEVKKALSKEEA 456
+PH ID + E K+A+++EE+
Sbjct: 69 ARPHTIDGRVVEPKRAVAREES 90
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog Length = 342 Score = 167 bits (422), Expect = 5e-41 Identities = 90/185 (48%), Positives = 114/185 (61%) Frame = +1 Query: 1 QWGELVDVVVMRMGGKNGKSRGFGFVTYKDPDMVDAAQASRPHIIDDRTVETKRAMPRDE 180 QWGE+VDVVVM+ K +SRGFGF+TY MVD AQ +RPH +D R VE KRA+PR E Sbjct: 39 QWGEIVDVVVMK-DPKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPRTE 97 Query: 181 ANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFGFVTYD 360 E+ TVKKLFVG +K+E+ +DLRDYF Q+G + I+ +ET + RGF FV +D Sbjct: 98 IGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFD 157 Query: 361 DYDPVDKILLLKPHYIDNKRCEVKKALSKEEARSLKAKESMSTIGKSKFPAMSQSNGGMM 540 DYDPVDKI L + H I K +VKKAL K +A + +G + GG Sbjct: 158 DYDPVDKICLSRNHQIRGKHIDVKKALPKGDAPGGRGGGGRGGVG-------GGAGGGWG 210 Query: 541 GFMGD 555 G GD Sbjct: 211 GGRGD 215
Score = 61.2 bits (147), Expect = 4e-09
Identities = 32/96 (33%), Positives = 51/96 (53%)
Frame = +1
Query: 166 MPRDEANSAESHMTVKKLFVGALKKEVVADDLRDYFGQFGNITECEIITWRETGESRGFG 345
M R+ + H V+KLF+G L + L+ +F Q+G I + ++ +T SRGFG
Sbjct: 4 MDRENDHGEPEH--VRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFG 61
Query: 346 FVTYDDYDPVDKILLLKPHYIDNKRCEVKKALSKEE 453
F+TY VD +PH +D + E K+A+ + E
Sbjct: 62 FITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPRTE 97
Score = 32.7 bits (73), Expect = 1.4
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +1
Query: 571 SNRYDNFGYQD--YDDRFGRYPNQGYSGGPVRGNMSY---RNQPYSGRMRR 708
S + N GY D FG Q Y GG VRG+ Y R+ PYS R R
Sbjct: 277 SGGWSNDGYNSGPQSDGFGGGYKQSYGGGAVRGSSGYGGSRSAPYSDRGSR 327
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,959,838
Number of Sequences: 369166
Number of extensions: 1718584
Number of successful extensions: 5330
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5141
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
