Planaria EST Database

DrC_00690

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00690
         (1164 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15562|YMA6_PODAN  Hypothetical 34.3 kDa protein in ATP6 ...    33   2.0  
sp|Q04544|POLN_SOUV3  Non-structural polyprotein [Contains: ...    32   3.5  
sp|Q12224|RLM1_YEAST  Transcription factor RLM1                    32   3.5  
sp|Q6P0N0|CV106_HUMAN  Protein C14orf106 (P243)                    32   3.5  
sp|Q9L7Q2|ZMPB_STRPN  Zinc metalloprotease zmpB precursor          31   7.8  

>sp|P15562|YMA6_PODAN Hypothetical 34.3 kDa protein in ATP6 5'region (ORFC)
          Length = 296

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
 Frame = +2

Query: 479 LASLMVRLKEYDIRPKRVDSLRNSLFSL-----MFNDQSFSNDSDILKVFQNEPNLIHDP 643
           L+S+ V +      P  ++ L N L  +     ++++QS      I +V  N+PN ++DP
Sbjct: 193 LSSMSVEMPSNTTNPSDIERLNNLLEDIKKSLELYDNQSLKFRKHISEVNNNDPNCVYDP 252

Query: 644 LNIRRPRIYPNYLR--DYVIDNNK 709
              R   ++ +Y++  D + D  K
Sbjct: 253 ---RSKELFKDYIKLVDLLKDQQK 273

>sp|Q04544|POLN_SOUV3 Non-structural polyprotein [Contains: p48; Helicase (2C-like protein)
            (P2C); 3A-like protein; Viral genome-linked protein
            (VPg); Thiol protease P3C (3C-like protease) (3C-pro);
            RNA-directed RNA polymerase ]
          Length = 1788

 Score = 32.0 bits (71), Expect = 3.5
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
 Frame = +2

Query: 224  LTSVQELIERLARNKIIPNRMDCGI------DSTFTLFICDEQFSKISQYTNENLLIIRF 385
            LT+  EL   +A++ + P+ MD G       +   + F C  Q + I+ +          
Sbjct: 1544 LTASPELASVVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHW---------- 1593

Query: 386  LPHMAVVTECTNLSLRIENS----------EIQICSISYDSLASLMVRLKEYDIRPKRVD 535
            L  +  ++E T LS  +  S          EI    I +D  A L   L+EY +RP R D
Sbjct: 1594 LITLCALSEVTGLSPDVIQSMSYFSFYGDDEIVSTDIEFDP-AKLTQVLREYGLRPTRPD 1652

Query: 536  S------LRNSLFSLMFNDQSFSNDS 595
                   +R S+  L+F  ++ S D+
Sbjct: 1653 KSEGPIIVRKSVDGLVFLRRTISRDA 1678

>sp|Q12224|RLM1_YEAST Transcription factor RLM1
          Length = 676

 Score = 32.0 bits (71), Expect = 3.5
 Identities = 22/87 (25%), Positives = 45/87 (51%)
 Frame = +2

Query: 566 FNDQSFSNDSDILKVFQNEPNLIHDPLNIRRPRIYPNYLRDYVIDNNKGEPVSGLDLISF 745
           F + S  + +D++  +QN+ NL+H+   ++ P  Y ++ +   ++ N+    S +   S 
Sbjct: 54  FYEFSSVDTNDLIYHYQNDKNLLHE---VKDPSDYGDFHKSASVNINQDLLRSSM---SN 107

Query: 746 VPSRSNFAPVKTSQNHSNNESLEDLGD 826
            PS+SN   +  S+N  +  + ED  D
Sbjct: 108 KPSKSNVKGMNQSENDDDENNDEDDDD 134

>sp|Q6P0N0|CV106_HUMAN Protein C14orf106 (P243)
          Length = 1132

 Score = 32.0 bits (71), Expect = 3.5
 Identities = 22/88 (25%), Positives = 42/88 (47%)
 Frame = +2

Query: 332 QFSKISQYTNENLLIIRFLPHMAVVTECTNLSLRIENSEIQICSISYDSLASLMVRLKEY 511
           QF K++ + N+N+     L          ++S    N +      +Y+S   + +R+KE 
Sbjct: 62  QFLKMTTFNNKNIFQSTMLTEATTSNSSLDISAIKPNKDGLKNKANYESPGKIFLRMKEK 121

Query: 512 DIRPKRVDSLRNSLFSLMFNDQSFSNDS 595
            +R K+    RNS  SL+   +S +N++
Sbjct: 122 VLRDKQEQPSRNS--SLLEPQKSGNNET 147

>sp|Q9L7Q2|ZMPB_STRPN Zinc metalloprotease zmpB precursor
          Length = 1906

 Score = 30.8 bits (68), Expect = 7.8
 Identities = 41/160 (25%), Positives = 75/160 (46%)
 Frame = +2

Query: 263  NKIIPNRMDCGIDSTFTLFICDEQFSKISQYTNENLLIIRFLPHMAVVTECTNLSLRIEN 442
            NKII +  D G    F L    E  S + +YT  +L I ++ P++ V  + T L   I+ 
Sbjct: 1142 NKIIVHYAD-GTKDYFNLSSSSEGLSNVKEYTITDLGI-KYTPNI-VQKDNTTLVNDIK- 1197

Query: 443  SEIQICSISYDSLASLMVRLKEYDIRPKRVDSLRNSLFSLMFNDQSFSNDSDILKVFQNE 622
            S ++   +   ++   + RL +Y     RV+++++      F D   +  + I K+ QNE
Sbjct: 1198 SILESVELQSQTMYQHLNRLGDY-----RVNAIKDLYLEESFTDVKENLTNLITKLVQNE 1252

Query: 623  PNLIHDPLNIRRPRIYPNYLRDYVIDNNKGEPVSGLDLIS 742
             + ++D    R+       +RD V + NK   + GL  ++
Sbjct: 1253 EHQLNDSPAARQ------MIRDKV-EKNKAALLLGLTYLN 1285

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,017,529
Number of Sequences: 369166
Number of extensions: 2418795
Number of successful extensions: 5580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5578
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 13107781500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00690

  1. Dr_sW_018_A08
  2. Dr_sW_005_N05