Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_A08
(889 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P15562|YMA6_PODAN Hypothetical 34.3 kDa protein in ATP6 ... 33 1.4
sp|Q04544|POLN_SOUV3 Non-structural polyprotein [Contains: ... 32 2.4
sp|Q12224|RLM1_YEAST Transcription factor RLM1 32 2.4
sp|Q6P0N0|CV106_HUMAN Protein C14orf106 (P243) 32 2.4
sp|Q9L7Q2|ZMPB_STRPN Zinc metalloprotease zmpB precursor 31 5.3
sp|P30996|BXF_CLOBO Botulinum neurotoxin type F precursor (... 30 6.9
sp|Q59U11|GRC3_CANAL Protein GRC3 30 6.9
sp|Q09744|YB63_SCHPO Hypothetical protein C12C2.03c in chro... 30 6.9
sp|Q5XJY6|FANCB_MOUSE Fanconi anemia group B protein homolo... 30 6.9
sp|Q8KG15|RPOB_CHLTE DNA-directed RNA polymerase beta chain... 30 9.0
>sp|P15562|YMA6_PODAN Hypothetical 34.3 kDa protein in ATP6 5'region (ORFC)
Length = 296
Score = 32.7 bits (73), Expect = 1.4
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Frame = +2
Query: 479 LASLMVRLKEYDIRPKRVDSLRNSLFSL-----MFNDQSFSNDSDILKVFQNEPNLIHDP 643
L+S+ V + P ++ L N L + ++++QS I +V N+PN ++DP
Sbjct: 193 LSSMSVEMPSNTTNPSDIERLNNLLEDIKKSLELYDNQSLKFRKHISEVNNNDPNCVYDP 252
Query: 644 LNIRRPRIYPNYLR--DYVIDNNK 709
R ++ +Y++ D + D K
Sbjct: 253 ---RSKELFKDYIKLVDLLKDQQK 273
>sp|Q04544|POLN_SOUV3 Non-structural polyprotein [Contains: p48; Helicase (2C-like protein)
(P2C); 3A-like protein; Viral genome-linked protein
(VPg); Thiol protease P3C (3C-like protease) (3C-pro);
RNA-directed RNA polymerase ]
Length = 1788
Score = 32.0 bits (71), Expect = 2.4
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Frame = +2
Query: 224 LTSVQELIERLARNKIIPNRMDCGI------DSTFTLFICDEQFSKISQYTNENLLIIRF 385
LT+ EL +A++ + P+ MD G + + F C Q + I+ +
Sbjct: 1544 LTASPELASVVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHW---------- 1593
Query: 386 LPHMAVVTECTNLSLRIENS----------EIQICSISYDSLASLMVRLKEYDIRPKRVD 535
L + ++E T LS + S EI I +D A L L+EY +RP R D
Sbjct: 1594 LITLCALSEVTGLSPDVIQSMSYFSFYGDDEIVSTDIEFDP-AKLTQVLREYGLRPTRPD 1652
Query: 536 S------LRNSLFSLMFNDQSFSNDS 595
+R S+ L+F ++ S D+
Sbjct: 1653 KSEGPIIVRKSVDGLVFLRRTISRDA 1678
>sp|Q12224|RLM1_YEAST Transcription factor RLM1
Length = 676
Score = 32.0 bits (71), Expect = 2.4
Identities = 22/87 (25%), Positives = 45/87 (51%)
Frame = +2
Query: 566 FNDQSFSNDSDILKVFQNEPNLIHDPLNIRRPRIYPNYLRDYVIDNNKGEPVSGLDLISF 745
F + S + +D++ +QN+ NL+H+ ++ P Y ++ + ++ N+ S + S
Sbjct: 54 FYEFSSVDTNDLIYHYQNDKNLLHE---VKDPSDYGDFHKSASVNINQDLLRSSM---SN 107
Query: 746 VPSRSNFAPVKTSQNHSNNESLEDLGD 826
PS+SN + S+N + + ED D
Sbjct: 108 KPSKSNVKGMNQSENDDDENNDEDDDD 134
>sp|Q6P0N0|CV106_HUMAN Protein C14orf106 (P243)
Length = 1132
Score = 32.0 bits (71), Expect = 2.4
Identities = 22/88 (25%), Positives = 42/88 (47%)
Frame = +2
Query: 332 QFSKISQYTNENLLIIRFLPHMAVVTECTNLSLRIENSEIQICSISYDSLASLMVRLKEY 511
QF K++ + N+N+ L ++S N + +Y+S + +R+KE
Sbjct: 62 QFLKMTTFNNKNIFQSTMLTEATTSNSSLDISAIKPNKDGLKNKANYESPGKIFLRMKEK 121
Query: 512 DIRPKRVDSLRNSLFSLMFNDQSFSNDS 595
+R K+ RNS SL+ +S +N++
Sbjct: 122 VLRDKQEQPSRNS--SLLEPQKSGNNET 147
>sp|Q9L7Q2|ZMPB_STRPN Zinc metalloprotease zmpB precursor
Length = 1906
Score = 30.8 bits (68), Expect = 5.3
Identities = 41/160 (25%), Positives = 75/160 (46%)
Frame = +2
Query: 263 NKIIPNRMDCGIDSTFTLFICDEQFSKISQYTNENLLIIRFLPHMAVVTECTNLSLRIEN 442
NKII + D G F L E S + +YT +L I ++ P++ V + T L I+
Sbjct: 1142 NKIIVHYAD-GTKDYFNLSSSSEGLSNVKEYTITDLGI-KYTPNI-VQKDNTTLVNDIK- 1197
Query: 443 SEIQICSISYDSLASLMVRLKEYDIRPKRVDSLRNSLFSLMFNDQSFSNDSDILKVFQNE 622
S ++ + ++ + RL +Y RV+++++ F D + + I K+ QNE
Sbjct: 1198 SILESVELQSQTMYQHLNRLGDY-----RVNAIKDLYLEESFTDVKENLTNLITKLVQNE 1252
Query: 623 PNLIHDPLNIRRPRIYPNYLRDYVIDNNKGEPVSGLDLIS 742
+ ++D R+ +RD V + NK + GL ++
Sbjct: 1253 EHQLNDSPAARQ------MIRDKV-EKNKAALLLGLTYLN 1285
>sp|P30996|BXF_CLOBO Botulinum neurotoxin type F precursor (BoNT/F) (Bontoxilysin F)
[Contains: Botulinum neurotoxin F light chain; Botulinum
neurotoxin F heavy chain]
Length = 1274
Score = 30.4 bits (67), Expect = 6.9
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Frame = +2
Query: 341 KISQYTNENLLIIRFLPHMAVVTECTNLSLRIENSEIQICSISYDSLASLMVRLKEYDIR 520
++S YTN+ +LII F + + + L +R EN++ I Y S S+ + Y
Sbjct: 844 ELSSYTNDKILIIYFNRLYKKIKDSSILDMRYENNKF-IDISGYGSNISINGNVYIYSTN 902
Query: 521 PKRVDSLRNSLFSLMFNDQSFSNDSDILKVFQNEPNLIHDPLNIRRPRIYP--NYLRDYV 694
+ +++ ++ + + ++DI ++ + +R P+ Y N+ R+Y
Sbjct: 903 RNQF-----GIYNSRLSEVNIAQNNDI--IYNSRYQNFSISFWVRIPKHYKPMNHNREYT 955
Query: 695 IDNNKGEPVSG 727
I N G SG
Sbjct: 956 IINCMGNNNSG 966
>sp|Q59U11|GRC3_CANAL Protein GRC3
Length = 686
Score = 30.4 bits (67), Expect = 6.9
Identities = 36/177 (20%), Positives = 71/177 (40%), Gaps = 1/177 (0%)
Frame = +2
Query: 218 VELTSVQELIERLARNKIIPNRMDCGI-DSTFTLFICDEQFSKISQYTNENLLIIRFLPH 394
+ T L R+ ++ PN + D+ T+ + ++ IS N ++ +
Sbjct: 79 ISSTPAPILNSRITQSNYTPNESNLKFSDNHVTITLNPSEYIIISGQCN-----LKIIKG 133
Query: 395 MAVVTECTNLSLRIENSEIQICSISYDSLASLMVRLKEYDIRPKRVDSLRNSLFSLMFND 574
+ +C L+ +N I ++ SL + Y D + + S++ +
Sbjct: 134 SIKINQCHCLTSE-DNKSYNIIALQSQSLPII----SHYTTPEMEEDGVPS--VSIIKLE 186
Query: 575 QSFSNDSDILKVFQNEPNLIHDPLNIRRPRIYPNYLRDYVIDNNKGEPVSGLDLISF 745
SFS +I ++ NLI N+ P ++ NY D ++ G GLD+ S+
Sbjct: 187 NSFSGIENISQIEPAFKNLISGQPNVEEPSLFKNYSFDIILTETNGG--YGLDINSY 241
>sp|Q09744|YB63_SCHPO Hypothetical protein C12C2.03c in chromosome II
Length = 571
Score = 30.4 bits (67), Expect = 6.9
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -3
Query: 623 VRSGILLEYLNHSKNSDH*TSMKTMSCVMNRHALVECRILSSEPLKTPNYHKK*NKFEFR 444
V + + E L + S ++ KT CV N + + CR SEP ++ N + NK
Sbjct: 5 VATSLKAEILPSPRTSSPSSNFKT--CVSNENGCINCRCSPSEPHESANVDESVNKLSKT 62
Query: 443 NSQFSM 426
S+ S+
Sbjct: 63 FSKLSL 68
>sp|Q5XJY6|FANCB_MOUSE Fanconi anemia group B protein homolog (Protein FACB)
Length = 703
Score = 30.4 bits (67), Expect = 6.9
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Frame = +2
Query: 62 DEDGTIPYEFETDDDCITPNDGIFEVIPFMAKLLSNLKCSFYSRNSEIVIAGVELTSVQE 241
D+DG +P+ E +D TP + + + P ++ C + ++ G ++TS++E
Sbjct: 436 DQDGLVPFCDEGEDSVPTPEENLPDNFPEPEHIVEQTWCHVL---DDDLVVGAKVTSLKE 492
Query: 242 LIERLARNKIIPNRMDCGIDSTFTLFICDEQFSKISQYTNENLLIIRFLPHMAV--VTEC 415
+ + M+ G S+F L C Q + L HM + EC
Sbjct: 493 -----SNEMTLSLIMNQGNRSSFHLMKCHSQ--------------VWLLKHMKCERIQEC 533
Query: 416 TNLSL 430
T + L
Sbjct: 534 TEIYL 538
>sp|Q8KG15|RPOB_CHLTE DNA-directed RNA polymerase beta chain (RNAP beta subunit)
(Transcriptase beta chain) (RNA polymerase beta subunit)
Length = 1303
Score = 30.0 bits (66), Expect = 9.0
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 530 VDSLRNSLFSLMFNDQSFSNDSDILKVFQNEPNLIHDPLNIRRPRIYPNYLRDYVIDNNK 709
+D +N L + + F+ D DIL +F + + +R ++ YL +ID
Sbjct: 197 IDQKKNFLVTALLRAIGFAKDEDILGLFDLVEEVEVSSKSSKREQLLGQYLASDIIDMTT 256
Query: 710 GEPV 721
GE V
Sbjct: 257 GEVV 260
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,130,800
Number of Sequences: 369166
Number of extensions: 1901274
Number of successful extensions: 4547
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4545
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)