Planaria EST Database

DrC_00671

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00671
         (510 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7M2P1|STP3_PIG  Spermatid nuclear transition protein 3 (...    29   7.3  
sp|P32598|PP12_YEAST  Serine/threonine protein phosphatase P...    28   9.6  

>sp|Q7M2P1|STP3_PIG Spermatid nuclear transition protein 3 (STP-3) (TP-3) (TP3)
          Length = 76

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 128 TRQPWQPRSTYTPSWRPRPTRNYINNRLSRLERQIRIIYSRV 253
           T + WQP++T T  W+ R T +   +R      ++R IY +V
Sbjct: 4   TEKSWQPQTTSTKRWKKRKTPSQPRSR-----GKVRKIYKKV 40

>sp|P32598|PP12_YEAST Serine/threonine protein phosphatase PP1-2
          Length = 312

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 345 LRYLCNTLRK*FNKEPLFLLFKLFINRCNELTREY 241
           +RYLC+  R  F K+P+ L  +  I  C ++  +Y
Sbjct: 34  IRYLCSKARSIFIKQPILLELEAPIKICGDIHGQY 68

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,216,804
Number of Sequences: 369166
Number of extensions: 637913
Number of successful extensions: 1616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00671

  1. Dr_sW_017_K03
  2. Dr_sW_012_J01
  3. Dr_sW_011_G19
  4. Dr_sW_001_K05