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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00663
         (877 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6PD26|PIGS_MOUSE  GPI transamidase component PIG-S (Phos...    77   8e-14
sp|Q5XI31|PIGS_RAT  GPI transamidase component PIG-S (Phosph...    76   1e-13
sp|Q96S52|PIGS_HUMAN  GPI transamidase component PIG-S (Phos...    75   2e-13
sp|Q10351|PIGS_SCHPO  GPI transamidase component PIG-S homolog     42   0.002
sp|Q9JXK5|PUR4_NEIMB  Phosphoribosylformylglycinamidine synt...    38   0.032
sp|Q04080|GPI17_YEAST  GPI transamidase component GPI17            38   0.042
sp|Q51791|PHZE_PSEFL  Anthranilate synthase, phenazine speci...    35   0.21 
sp|Q51519|PHZB_PSECL  Anthranilate synthase, phenazine speci...    34   0.47 
sp|Q9F6X6|BCHN_CHLAU  Light-independent protochlorophyllide ...    33   1.0  
sp|P40456|YIP1_YEAST  Hypothetical 128.7 kDa protein in IMP2...    32   3.0  

>sp|Q6PD26|PIGS_MOUSE GPI transamidase component PIG-S (Phosphatidylinositol-glycan
           biosynthesis, class S protein)
          Length = 555

 Score = 76.6 bits (187), Expect = 8e-14
 Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 19/214 (8%)
 Frame = +2

Query: 287 VRTSAKYDWTFSLIVPHPKGGDSTEWDFPRIEHLYLEPLLRKLAPFISVKVSSQIIYGVR 466
           +++S  Y+ TFSL+ P PK  D   WD       +++P L +L+   +  V SQI+Y   
Sbjct: 221 LKSSLGYEITFSLLNPDPKSHD-VHWDIEGAVQRFVQPFLNRLSVAGNFSVDSQILYYAM 279

Query: 467 LERIWPSKYRDHTNRFYSKEDLTHVVNGIETYLGSNTG-----LHFVGYIASSSEAEGGI 631
           L  + P      ++   +   L HV+N +E+ LGS+       LHF+ Y+   + +   I
Sbjct: 280 LG-VNPRFDPASSSYSLAMHSLPHVINPVESRLGSSAASLYPVLHFLLYVPELAHSPLYI 338

Query: 632 QLHTEGN---TDAFAVPRWGGVAFMN------NVS-LPVNAD----DLMGVFLPQICSLM 769
           Q   +G    T+AF  PRWGG+   N      N S LPV  +     +M VFL Q+  L 
Sbjct: 339 Q-DKDGAPVATNAFHSPRWGGIMVYNVDPKIYNASELPVRVEVDMVRVMEVFLAQLRLLF 397

Query: 770 GLTKPIIDPLIIPFERLDPAMVSGVSAWQIDAWL 871
           G+ +P + P  +    L      G+  W++D  L
Sbjct: 398 GIAQPQVPPKCL----LSGPKSEGLMTWELDRLL 427

>sp|Q5XI31|PIGS_RAT GPI transamidase component PIG-S (Phosphatidylinositol-glycan
           biosynthesis, class S protein)
          Length = 555

 Score = 76.3 bits (186), Expect = 1e-13
 Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 19/214 (8%)
 Frame = +2

Query: 287 VRTSAKYDWTFSLIVPHPKGGDSTEWDFPRIEHLYLEPLLRKLAPFISVKVSSQIIYGVR 466
           +++S  Y+ TFSL+ P PK  D   WD       Y++P L +L+   +  V SQI+Y   
Sbjct: 221 LKSSLGYEITFSLLNPDPKSHD-VHWDIEEGVQRYVQPFLNRLSAAGNFSVDSQILYYAM 279

Query: 467 LERIWPSKYRDHTNRFYSKEDLTHVVNGIETYLGSNTG-----LHFVGYIASSSEAEGGI 631
           L  + P      ++   +   L HV+N +E+ LGS+       L+F+ Y+   + +   I
Sbjct: 280 LG-VNPRFDPASSSYSLAMHSLPHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYI 338

Query: 632 QLHTEGN---TDAFAVPRWGGVAFMN------NVS-LPVNAD----DLMGVFLPQICSLM 769
           Q   +G    T+AF  PRWGG+   N      N S LPV  +     +M VFL Q+  L 
Sbjct: 339 Q-DKDGAPVATNAFHSPRWGGIMVYNVDPKIYNASELPVRVEVDMAQVMEVFLAQLRLLF 397

Query: 770 GLTKPIIDPLIIPFERLDPAMVSGVSAWQIDAWL 871
           G+ +P + P  +    L      G+  W++D  L
Sbjct: 398 GIAQPQVPPKCL----LSGPKSEGLMTWELDRLL 427

>sp|Q96S52|PIGS_HUMAN GPI transamidase component PIG-S (Phosphatidylinositol-glycan
           biosynthesis, class S protein)
          Length = 555

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 19/214 (8%)
 Frame = +2

Query: 287 VRTSAKYDWTFSLIVPHPKGGDSTEWDFPRIEHLYLEPLLRKLAPFISVKVSSQIIYGVR 466
           +++S  Y+ TFSL+ P PK  D   WD       Y++P L  L    +  V SQI+Y   
Sbjct: 221 LKSSLGYEITFSLLNPDPKSHD-VYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAM 279

Query: 467 LERIWPSKYRDHTNRFYSKEDLTHVVNGIETYLGSNTG-----LHFVGYIASSSEAEGGI 631
           L  + P      ++ +     L HV+N +E+ LGS+       L+F+ Y+   + +   I
Sbjct: 280 LG-VNPRFDSASSSYYLDMHSLPHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYI 338

Query: 632 QLHTEGN---TDAFAVPRWGGVAFMNNVSLPVNADDL-----------MGVFLPQICSLM 769
           Q   +G    T+AF  PRWGG+   N  S   NA  L           M VFL Q+  L 
Sbjct: 339 Q-DKDGAPVATNAFHSPRWGGIMVYNVDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLF 397

Query: 770 GLTKPIIDPLIIPFERLDPAMVSGVSAWQIDAWL 871
           G+ +P + P  +    L      G+  W++D  L
Sbjct: 398 GIAQPQLPPKCL----LSGPTSEGLMTWELDRLL 427

>sp|Q10351|PIGS_SCHPO GPI transamidase component PIG-S homolog
          Length = 554

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
 Frame = +2

Query: 242 SLTDIPKRIRSFLTRVRTSAKYDWTFSLIVPHPKGGDSTEWDFPRIEHLYLEPLLRKLAP 421
           S T  P R  +  T V+ S +Y    SL+V      +   WD       Y  PL+ +LA 
Sbjct: 220 SSTVEPSRAETKRT-VQFSPQYRVLLSLLVGEGNH-EPINWDIENAIQKYFNPLIEQLAS 277

Query: 422 FISVKVSSQIIYGVRLERIWPSKYRDHTNRFYSKE-DLTHVVNGIETYLG-----SNTGL 583
              + + +QI Y V       ++     ++F +K  DL ++VN  E YL          +
Sbjct: 278 LAKLNIETQIQYFVE-----DAEAYIKDDKFCTKHADLPNLVNNFEKYLSFSPHIREPTI 332

Query: 584 HFVGYIASSSEAEGGIQLHTEGN----TDAFAVPRWGGVAFMN 700
           HFV Y+ S       + L  E +    T++  +P+WG +  +N
Sbjct: 333 HFVLYVPSPQIQP--LWLENEDSNIIPTNSMLLPQWGSITTIN 373

>sp|Q9JXK5|PUR4_NEIMB Phosphoribosylformylglycinamidine synthase (FGAM synthase) (FGAMS)
           (Formylglycinamide ribotide amidotransferase) (FGARAT)
           (Formylglycinamide ribotide synthetase)
          Length = 1320

 Score = 38.1 bits (87), Expect = 0.032
 Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
 Frame = +2

Query: 425 ISVKVSSQIIYGVRLERIWPSKYRDHTNRFYSKEDLTHVVNGIETYLGSNTGLHFVGYIA 604
           ++ K +S +I G ++ER +P+   +   RF+  E+ TH++  +ET+        F G   
Sbjct: 257 VAYKDNSSVIEGAKIERFYPNAAENQGYRFH--EEDTHIIMKVETHNHPTAIAPFAG--- 311

Query: 605 SSSEAEGGIQLHTEGNTDAFAVPRWGGVAF-MNNVSLP 715
            ++   GG ++  EG T   + P+ G   F ++N+++P
Sbjct: 312 -AATGAGG-EIRDEGATGKGSRPKAGLTGFTVSNLNIP 347

>sp|Q04080|GPI17_YEAST GPI transamidase component GPI17
          Length = 534

 Score = 37.7 bits (86), Expect = 0.042
 Identities = 57/256 (22%), Positives = 103/256 (40%), Gaps = 21/256 (8%)
 Frame = +2

Query: 119 VPFESLYRIEKVIYKSITGIIARNDDLNGVYRAALEVPGKESLTDIPKRIRSFLTRVRTS 298
           + + S Y  ++ +       +  ND    V +  +E   +   T + K      T    +
Sbjct: 124 IGYSSAYDTKETLVYYDDAAVLSNDLPFFVAQTLVEHTFQLEWTHLNKTCEGVSTNNDVA 183

Query: 299 AKYDWTFSLIVPHPKG-GDSTEWDFPRIEHLYLEPLLRKLAPFISVKVSSQIIYGVRLER 475
             YD    L V    G G+   W+       Y  P  + L+P ++  V S I+Y   L  
Sbjct: 184 ISYDPNIHLSVTLLSGDGNPVAWEIEPTLTDYFSPFRKFLSPLVNFTVDSSIVYHNDLNL 243

Query: 476 IWPSKYRDHTNRFYSKEDLTHVVNGIE----TYLGSNTGLHF-VGYIASSSEAEG----- 625
              +        F    DL+H ++  E     Y   ++ L+  + + ++SS  +G     
Sbjct: 244 HSLNGSCTSVTWF----DLSHTIDLSELSSMAYYPEDSALNLAIVFPSASSSPDGLAFIN 299

Query: 626 GIQLHTEGNT---DAFAVPRWGGVAFMNNVSLPVNA-------DDLMGVFLPQICSLMGL 775
           G ++  E  T   +++ VP+W GV  +N + L  N+       + +M  F   I  L+GL
Sbjct: 300 GTRISDEITTLDWNSYLVPQW-GVIIINKMPLKPNSVISEDYLEPMMYRFATDIFQLLGL 358

Query: 776 TKPIIDPLIIPFERLD 823
           T+   D L+ P+  +D
Sbjct: 359 TEGSQD-LLSPYITID 373

>sp|Q51791|PHZE_PSEFL Anthranilate synthase, phenazine specific [Includes: Glutamine
           amidotransferase]
          Length = 637

 Score = 35.4 bits (80), Expect = 0.21
 Identities = 28/98 (28%), Positives = 56/98 (57%), Gaps = 10/98 (10%)
 Frame = +2

Query: 212 RAALEVPGKESLTD-IPKRIRSF--LTRVRT-SAKYDWT-FSLIVPHPKGGDSTEWDFPR 376
           R  L V  +++ T  I K++R+   +  VR+ S +Y +  + L++  P  G+ ++   P+
Sbjct: 436 RQVLIVDAEDTFTSMIAKQLRALGLVVTVRSFSDEYSFDGYDLVIMGPGPGNPSDVQLPK 495

Query: 377 IEHLY--LEPLLRKLAPFISVKVSSQII---YGVRLER 475
           I+HL+  +  LL +  PF++V +S Q++    G+ L+R
Sbjct: 496 IDHLHVAIRSLLNQQRPFLAVCLSHQVLSLCLGLELQR 533

>sp|Q51519|PHZB_PSECL Anthranilate synthase, phenazine specific [Includes: Glutamine
           amidotransferase]
          Length = 637

 Score = 34.3 bits (77), Expect = 0.47
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
 Frame = +2

Query: 212 RAALEVPGKESLTD-IPKRIRSF---LTRVRTSAKYDWT-FSLIVPHPKGGDSTEWDFPR 376
           R  L V  +++ T  I K++R+    +T    S +Y +  + L++  P  G+ +E   P+
Sbjct: 436 RQVLIVDAEDTFTSMIAKQLRALGLVVTVCSFSDEYSFEGYDLVIMGPGPGNPSEVQQPK 495

Query: 377 IEHLY--LEPLLRKLAPFISVKVSSQII---YGVRLER 475
           I HL+  +  LL +  PF++V +S Q++    G+ L+R
Sbjct: 496 INHLHVAIRSLLSQQRPFLAVCLSHQVLSLCLGLELQR 533

>sp|Q9F6X6|BCHN_CHLAU Light-independent protochlorophyllide reductase subunit N (LI-POR
           subunit N) (DPOR subunit N)
          Length = 444

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 375 LGKSHSVESPPFG*GTIRENVQSYFADVRTRVRNER 268
           L  SH  E PP G GT+   +Q Y     T++RNER
Sbjct: 207 LPASHFTELPPIGPGTVIAPLQPYLHKTATQLRNER 242

>sp|P40456|YIP1_YEAST Hypothetical 128.7 kDa protein in IMP2-DNA43 intergenic region
          Length = 1118

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = -2

Query: 873 RNHASICHADTPETIAGSNRSNGMI----RGSIIGLVSPIKLQICGRNTPMRSSAFTGRE 706
           + H+S  H DTPE+     R  G++    +G I G+ +    QI  +NTP ++   + R 
Sbjct: 43  KRHSSSSHNDTPESSFAKRRVPGIVDPVGKGFIDGITNS---QISAQNTPSKTDDASRRP 99

Query: 705 TL---FMKATP 682
           ++    M++TP
Sbjct: 100 SISRKVMESTP 110

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,047,728
Number of Sequences: 369166
Number of extensions: 2742727
Number of successful extensions: 8094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8083
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_027_L05
2. Dr_sW_017_H23