Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_L05
(603 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6PD26|PIGS_MOUSE GPI transamidase component PIG-S (Phos... 56 6e-08
sp|Q96S52|PIGS_HUMAN GPI transamidase component PIG-S (Phos... 55 1e-07
sp|Q5XI31|PIGS_RAT GPI transamidase component PIG-S (Phosph... 55 1e-07
sp|Q10351|PIGS_SCHPO GPI transamidase component PIG-S homolog 37 0.029
sp|Q51791|PHZE_PSEFL Anthranilate synthase, phenazine speci... 35 0.11
sp|Q51519|PHZB_PSECL Anthranilate synthase, phenazine speci... 34 0.25
sp|Q9JXK5|PUR4_NEIMB Phosphoribosylformylglycinamidine synt... 33 0.43
sp|Q9F6X6|BCHN_CHLAU Light-independent protochlorophyllide ... 33 0.56
sp|P45737|CATA_BACFR Catalase 31 2.1
sp|Q53RB0|LOX4_ORYSA Probable lipoxygenase 4 30 3.6
>sp|Q6PD26|PIGS_MOUSE GPI transamidase component PIG-S (Phosphatidylinositol-glycan
biosynthesis, class S protein)
Length = 555
Score = 56.2 bits (134), Expect = 6e-08
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Frame = +3
Query: 126 VRTSAKYDWTFSLIVPHPKGGDSTEWDFPRIEHLYLEPLLRKLAPFISVKVSSQIIYGVR 305
+++S Y+ TFSL+ P PK D WD +++P L +L+ + V SQI+Y
Sbjct: 221 LKSSLGYEITFSLLNPDPKSHD-VHWDIEGAVQRFVQPFLNRLSVAGNFSVDSQILYYAM 279
Query: 306 LERIWPSKYRDHTNRFYSKEDLTHVVNGIETYLGSNTG-----LHFVGYIASSSEAEGGI 470
L + P ++ + L HV+N +E+ LGS+ LHF+ Y+ + + I
Sbjct: 280 L-GVNPRFDPASSSYSLAMHSLPHVINPVESRLGSSAASLYPVLHFLLYVPELAHSPLYI 338
Query: 471 QLHTEG---NTDAFAVPRWAACL 530
Q +G T+AF PRW +
Sbjct: 339 Q-DKDGAPVATNAFHSPRWGGIM 360
>sp|Q96S52|PIGS_HUMAN GPI transamidase component PIG-S (Phosphatidylinositol-glycan
biosynthesis, class S protein)
Length = 555
Score = 55.1 bits (131), Expect = 1e-07
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Frame = +3
Query: 126 VRTSAKYDWTFSLIVPHPKGGDSTEWDFPRIEHLYLEPLLRKLAPFISVKVSSQIIYGVR 305
+++S Y+ TFSL+ P PK D WD Y++P L L + V SQI+Y
Sbjct: 221 LKSSLGYEITFSLLNPDPKSHD-VYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAM 279
Query: 306 LERIWPSKYRDHTNRFYSKEDLTHVVNGIETYLGSNTG-----LHFVGYIASSSEAEGGI 470
L + P ++ + L HV+N +E+ LGS+ L+F+ Y+ + + I
Sbjct: 280 L-GVNPRFDSASSSYYLDMHSLPHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYI 338
Query: 471 QLHTEG---NTDAFAVPRWAACL 530
Q +G T+AF PRW +
Sbjct: 339 Q-DKDGAPVATNAFHSPRWGGIM 360
>sp|Q5XI31|PIGS_RAT GPI transamidase component PIG-S (Phosphatidylinositol-glycan
biosynthesis, class S protein)
Length = 555
Score = 55.1 bits (131), Expect = 1e-07
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Frame = +3
Query: 126 VRTSAKYDWTFSLIVPHPKGGDSTEWDFPRIEHLYLEPLLRKLAPFISVKVSSQIIYGVR 305
+++S Y+ TFSL+ P PK D WD Y++P L +L+ + V SQI+Y
Sbjct: 221 LKSSLGYEITFSLLNPDPKSHD-VHWDIEEGVQRYVQPFLNRLSAAGNFSVDSQILYYAM 279
Query: 306 LERIWPSKYRDHTNRFYSKEDLTHVVNGIETYLGSNTG-----LHFVGYIASSSEAEGGI 470
L + P ++ + L HV+N +E+ LGS+ L+F+ Y+ + + I
Sbjct: 280 L-GVNPRFDPASSSYSLAMHSLPHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYI 338
Query: 471 QLHTEG---NTDAFAVPRWAACL 530
Q +G T+AF PRW +
Sbjct: 339 Q-DKDGAPVATNAFHSPRWGGIM 360
>sp|Q10351|PIGS_SCHPO GPI transamidase component PIG-S homolog
Length = 554
Score = 37.4 bits (85), Expect = 0.029
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 10/158 (6%)
Frame = +3
Query: 81 SLTDIPKRIRSFLTRVRTSAKYDWTFSLIVPHPKGGDSTEWDFPRIEHLYLEPLLRKLAP 260
S T P R + T V+ S +Y SL+V + WD Y PL+ +LA
Sbjct: 220 SSTVEPSRAETKRT-VQFSPQYRVLLSLLVGEGNH-EPINWDIENAIQKYFNPLIEQLAS 277
Query: 261 FISVKVSSQIIYGVRLERIWPSKYRDHTNRFYSKE-DLTHVVNGIETYLG-----SNTGL 422
+ + +QI Y V ++ ++F +K DL ++VN E YL +
Sbjct: 278 LAKLNIETQIQYFVE-----DAEAYIKDDKFCTKHADLPNLVNNFEKYLSFSPHIREPTI 332
Query: 423 HFVGYIASSSEAEGGIQLHTEGN----TDAFAVPRWAA 524
HFV Y+ S + L E + T++ +P+W +
Sbjct: 333 HFVLYVPSPQIQP--LWLENEDSNIIPTNSMLLPQWGS 368
>sp|Q51791|PHZE_PSEFL Anthranilate synthase, phenazine specific [Includes: Glutamine
amidotransferase]
Length = 637
Score = 35.4 bits (80), Expect = 0.11
Identities = 28/98 (28%), Positives = 56/98 (57%), Gaps = 10/98 (10%)
Frame = +3
Query: 51 RAALEVPGKESLTD-IPKRIRSF--LTRVRT-SAKYDWT-FSLIVPHPKGGDSTEWDFPR 215
R L V +++ T I K++R+ + VR+ S +Y + + L++ P G+ ++ P+
Sbjct: 436 RQVLIVDAEDTFTSMIAKQLRALGLVVTVRSFSDEYSFDGYDLVIMGPGPGNPSDVQLPK 495
Query: 216 IEHLY--LEPLLRKLAPFISVKVSSQII---YGVRLER 314
I+HL+ + LL + PF++V +S Q++ G+ L+R
Sbjct: 496 IDHLHVAIRSLLNQQRPFLAVCLSHQVLSLCLGLELQR 533
>sp|Q51519|PHZB_PSECL Anthranilate synthase, phenazine specific [Includes: Glutamine
amidotransferase]
Length = 637
Score = 34.3 bits (77), Expect = 0.25
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Frame = +3
Query: 51 RAALEVPGKESLTD-IPKRIRSF---LTRVRTSAKYDWT-FSLIVPHPKGGDSTEWDFPR 215
R L V +++ T I K++R+ +T S +Y + + L++ P G+ +E P+
Sbjct: 436 RQVLIVDAEDTFTSMIAKQLRALGLVVTVCSFSDEYSFEGYDLVIMGPGPGNPSEVQQPK 495
Query: 216 IEHLY--LEPLLRKLAPFISVKVSSQII---YGVRLER 314
I HL+ + LL + PF++V +S Q++ G+ L+R
Sbjct: 496 INHLHVAIRSLLSQQRPFLAVCLSHQVLSLCLGLELQR 533
>sp|Q9JXK5|PUR4_NEIMB Phosphoribosylformylglycinamidine synthase (FGAM synthase) (FGAMS)
(Formylglycinamide ribotide amidotransferase) (FGARAT)
(Formylglycinamide ribotide synthetase)
Length = 1320
Score = 33.5 bits (75), Expect = 0.43
Identities = 22/84 (26%), Positives = 43/84 (51%)
Frame = +3
Query: 264 ISVKVSSQIIYGVRLERIWPSKYRDHTNRFYSKEDLTHVVNGIETYLGSNTGLHFVGYIA 443
++ K +S +I G ++ER +P+ + RF+ E+ TH++ +ET+ F G
Sbjct: 257 VAYKDNSSVIEGAKIERFYPNAAENQGYRFH--EEDTHIIMKVETHNHPTAIAPFAG--- 311
Query: 444 SSSEAEGGIQLHTEGNTDAFAVPR 515
++ GG ++ EG T + P+
Sbjct: 312 -AATGAGG-EIRDEGATGKGSRPK 333
>sp|Q9F6X6|BCHN_CHLAU Light-independent protochlorophyllide reductase subunit N (LI-POR
subunit N) (DPOR subunit N)
Length = 444
Score = 33.1 bits (74), Expect = 0.56
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 214 LGKSHSVESPPFG*GTIRENVQSYFADVRTRVRNER 107
L SH E PP G GT+ +Q Y T++RNER
Sbjct: 207 LPASHFTELPPIGPGTVIAPLQPYLHKTATQLRNER 242
>sp|P45737|CATA_BACFR Catalase
Length = 486
Score = 31.2 bits (69), Expect = 2.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -2
Query: 275 FHTDKRGEFPQQRFKIQMLDSREIPLCRISPF 180
+ + +RG+FP+ +F+IQ++ E RI+PF
Sbjct: 245 YESIERGDFPKWKFQIQLMTEEEADNYRINPF 276
>sp|Q53RB0|LOX4_ORYSA Probable lipoxygenase 4
Length = 877
Score = 30.4 bits (67), Expect = 3.6
Identities = 27/120 (22%), Positives = 51/120 (42%)
Frame = +3
Query: 33 DLNGVYRAALEVPGKESLTDIPKRIRSFLTRVRTSAKYDWTFSLIVPHPKGGDSTEWDFP 212
D+ +Y L+V +L +I KR+ L + D L +PH D W
Sbjct: 311 DIMELYEGGLKVANASALAEIKKRVPFELIKSLLPVAGDQVLKLPLPHVIKEDKFAW--- 367
Query: 213 RIEHLYLEPLLRKLAPFISVKVSSQIIYGVRLERIWPSKYRDHTNRFYSKEDLTHVVNGI 392
R + + +L + P + +K + L+ P+ Y DHT++ ++ + H + G+
Sbjct: 368 RTDEEFAREMLAGVNP-VMIKRLTNFPAKSTLD---PNVYGDHTSKI-TEAHIKHNMEGL 422
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,113,446
Number of Sequences: 369166
Number of extensions: 1923737
Number of successful extensions: 5895
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5888
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)