Planaria EST Database

DrC_00653

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00653
         (549 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38067|UGA2_YEAST  Succinate-semialdehyde dehydrogenase [...    31   1.7  
sp|Q7YR73|ICOS_CANFA  Inducible T-cell co-stimulator precurs...    30   3.0  

>sp|P38067|UGA2_YEAST Succinate-semialdehyde dehydrogenase [NADP+] (SSDH)
          Length = 497

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 225 LHDPAKLYEMNAINDKWIDGSDTVKTMEAVDPIEGTI 335
           L+DP    E   I+ KW+ G+D V   E VDP  G I
Sbjct: 11  LNDPNLFRESGYIDGKWVKGTDEV--FEVVDPASGEI 45

>sp|Q7YR73|ICOS_CANFA Inducible T-cell co-stimulator precursor (Activation-inducible
           lymphocyte immunomediatory molecule)
          Length = 208

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 467 CCNFNSFYIIGSIGFRCLSLHFCIGYCWLRIRNYRS 360
           CC    +  IG   F  + +  CI  CWL  + YRS
Sbjct: 136 CCQLKFWLPIGCAAFVVVYIFGCIFLCWLTKKKYRS 171

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,161,974
Number of Sequences: 369166
Number of extensions: 582199
Number of successful extensions: 1366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00653

  1. Dr_sW_017_D07
  2. Dr_sW_011_E12
  3. Dr_sW_003_A05