Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_D07
(549 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38067|UGA2_YEAST Succinate-semialdehyde dehydrogenase [... 31 1.7
sp|Q7YR73|ICOS_CANFA Inducible T-cell co-stimulator precurs... 30 3.0
>sp|P38067|UGA2_YEAST Succinate-semialdehyde dehydrogenase [NADP+] (SSDH)
Length = 497
Score = 31.2 bits (69), Expect = 1.7
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 225 LHDPAKLYEMNAINDKWIDGSDTVKTMEAVDPIEGTI 335
L+DP E I+ KW+ G+D V E VDP G I
Sbjct: 11 LNDPNLFRESGYIDGKWVKGTDEV--FEVVDPASGEI 45
>sp|Q7YR73|ICOS_CANFA Inducible T-cell co-stimulator precursor (Activation-inducible
lymphocyte immunomediatory molecule)
Length = 208
Score = 30.4 bits (67), Expect = 3.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 467 CCNFNSFYIIGSIGFRCLSLHFCIGYCWLRIRNYRS 360
CC + IG F + + CI CWL + YRS
Sbjct: 136 CCQLKFWLPIGCAAFVVVYIFGCIFLCWLTKKKYRS 171
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,161,974
Number of Sequences: 369166
Number of extensions: 582199
Number of successful extensions: 1366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)