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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00648
         (160 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9EPN1|NBEA_MOUSE  Neurobeachin protein (Lysosomal traffi...    29   3.0  
sp|Q8NFP9|NBEA_HUMAN  Neurobeachin protein (Lysosomal traffi...    29   3.0  

>sp|Q9EPN1|NBEA_MOUSE Neurobeachin protein (Lysosomal trafficking regulator 2)
          Length = 2936

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = -2

Query: 150 EILGIMARKSLKIKVLELRFSMLRKKS 70
           ++LG++A  S+ +K L+L FSMLR +S
Sbjct: 170 DMLGVLASYSITVKELKLLFSMLRGES 196

>sp|Q8NFP9|NBEA_HUMAN Neurobeachin protein (Lysosomal trafficking regulator 2) (BCL8B
           protein)
          Length = 2946

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = -2

Query: 150 EILGIMARKSLKIKVLELRFSMLRKKS 70
           ++LG++A  S+ +K L+L FSMLR +S
Sbjct: 180 DMLGVLASYSITVKELKLLFSMLRGES 206

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,310,683
Number of Sequences: 369166
Number of extensions: 247726
Number of successful extensions: 490
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 68,354,980
effective HSP length: 25
effective length of database: 63,736,605
effective search space used: 1720888335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_017_B22
2. Dr_sW_018_B21