Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_B21
(112 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9EPN1|NBEA_MOUSE Neurobeachin protein (Lysosomal traffi... 29 3.0
sp|Q8NFP9|NBEA_HUMAN Neurobeachin protein (Lysosomal traffi... 29 3.0
>sp|Q9EPN1|NBEA_MOUSE Neurobeachin protein (Lysosomal trafficking regulator 2)
Length = 2936
Score = 29.3 bits (64), Expect = 3.0
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = -2
Query: 102 EILGIMARKSLKIKVLELRFSMLRKKS 22
++LG++A S+ +K L+L FSMLR +S
Sbjct: 170 DMLGVLASYSITVKELKLLFSMLRGES 196
>sp|Q8NFP9|NBEA_HUMAN Neurobeachin protein (Lysosomal trafficking regulator 2) (BCL8B
protein)
Length = 2946
Score = 29.3 bits (64), Expect = 3.0
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = -2
Query: 102 EILGIMARKSLKIKVLELRFSMLRKKS 22
++LG++A S+ +K L+L FSMLR +S
Sbjct: 180 DMLGVLASYSITVKELKLLFSMLRGES 206
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,839,685
Number of Sequences: 369166
Number of extensions: 128975
Number of successful extensions: 268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 68,354,980
effective HSP length: 10
effective length of database: 66,507,630
effective search space used: 1729198380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)