Planaria EST Database

DrC_00599

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00599
         (812 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02100|SKO1_YEAST  CRE-binding bZIP protein SKO1                33   0.71 
sp|P25623|SYP1_YEAST  Suppressor of yeast profilin deletion        32   1.6  
sp|Q16512|PKN1_HUMAN  Protein kinase N1 (Protein kinase C-li...    31   4.6  
sp|Q10484|YDFC_SCHPO  Hypothetical protein C17C9.12 in chrom...    30   6.0  
sp|P50275|ASE1_YEAST  Anaphase spindle elongation protein          30   6.0  
sp|Q02945|VP4_ROTEH  Outer capsid protein VP4 (Hemagglutinin...    30   7.9  

>sp|Q02100|SKO1_YEAST CRE-binding bZIP protein SKO1
          Length = 647

 Score = 33.5 bits (75), Expect = 0.71
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
 Frame = +2

Query: 83  NLFPNSSTP-------RQNNALKSQSNDGNNTPKVSTKLPGLTTELLKK-LFPEETN 229
           +L+PNSS+P       +  N+  + SN GN  P   +++PG    L K  L P E+N
Sbjct: 164 SLYPNSSSPSGTSLIRQPRNSNVTTSNSGNGFPTNDSQMPGFLLNLSKSGLTPNESN 220

>sp|P25623|SYP1_YEAST Suppressor of yeast profilin deletion
          Length = 870

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = +2

Query: 20  LSPIKTPKSIDTR-KAKLPKAKNLFPNS---STPRQNNALKSQSNDGNNTPK---VSTKL 178
           L P  TPK++D    A  P A+   P+    STP+Q++   ++  D +N PK   +S   
Sbjct: 419 LPPHATPKNVDAPVTADTPPAQTFTPSEVPPSTPQQSSPPTAKEPDSSNLPKTVPISISQ 478

Query: 179 PGLTTELLKKLFPEE 223
           P L  +   K  P E
Sbjct: 479 PPLQPQSKTKPLPVE 493

>sp|Q16512|PKN1_HUMAN Protein kinase N1 (Protein kinase C-like 1) (Protein-kinase
           C-related kinase 1) (Protein kinase C-like PKN)
           (Serine-threonine protein kinase N) (Protein kinase
           PKN-alpha)
          Length = 942

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -2

Query: 469 PPDPHSTRGPICCVELPKHCLTVSSFPDNSVLGQWRFLKQPKFHFVLSQIRISGKV 302
           P +   T GP  C  L K  LT+  F   +VLG+  F K      +LS+ R SG++
Sbjct: 590 PSETQETPGPALCSPLRKSPLTLEDFKFLAVLGRGHFGK-----VLLSEFRPSGEL 640

>sp|Q10484|YDFC_SCHPO Hypothetical protein C17C9.12 in chromosome I
          Length = 319

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 29  IKTPKSIDTRKAKLPKAKNLFPNSSTPRQNNALKSQSNDGNNTPKVSTKLPGL 187
           +K P +        PK +++   +S   +NNAL+S +N  NNT + +   P +
Sbjct: 213 VKAPTATVAENEPYPKPQSVPTTTSPNNENNALRSTANVINNTRQSTATSPSM 265

>sp|P50275|ASE1_YEAST Anaphase spindle elongation protein
          Length = 885

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +2

Query: 32  KTPKSIDTRKAKLPKAKNLFPNSSTPRQNNALKSQSNDGNNTPKVSTKLPGLT 190
           K P S+ ++KA L  AK     S  PR  + LKS     +    V   LPGLT
Sbjct: 200 KKPLSLLSKKAALDTAKKFVLGSFLPRLRDYLKSLITLKHLIQSVKENLPGLT 252

>sp|Q02945|VP4_ROTEH Outer capsid protein VP4 (Hemagglutinin) (Outer layer protein VP4)
           [Contains: Outer capsid protein VP8; Outer capsid
           protein VP5]
          Length = 776

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +1

Query: 391 EKKKLLGSVSAALHSISDRVSSVDLAD---STAETVAPKMDIDNELSNLS 531
           +K KL  S+S   +S+SD  SSV       S + +V+   D+ N+L+++S
Sbjct: 553 KKSKLASSISTLTNSLSDASSSVSRNSSIRSVSSSVSAWTDVSNQLTDIS 602

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,028,746
Number of Sequences: 369166
Number of extensions: 1395544
Number of successful extensions: 4117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4108
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00599

  1. Dr_sW_015_K17
  2. Dr_sW_007_C11