Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_K17
(810 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02100|SKO1_YEAST CRE-binding bZIP protein SKO1 33 0.71
sp|P25623|SYP1_YEAST Suppressor of yeast profilin deletion 32 1.6
sp|Q10484|YDFC_SCHPO Hypothetical protein C17C9.12 in chrom... 30 6.0
sp|P50275|ASE1_YEAST Anaphase spindle elongation protein 30 6.0
sp|Q02945|VP4_ROTEH Outer capsid protein VP4 (Hemagglutinin... 30 7.8
>sp|Q02100|SKO1_YEAST CRE-binding bZIP protein SKO1
Length = 647
Score = 33.5 bits (75), Expect = 0.71
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = -2
Query: 728 NLFPNSSTP-------RQNNALKSQSNDGNNTPKVSTKLPGLTTELLKK-LFPEETN 582
+L+PNSS+P + N+ + SN GN P +++PG L K L P E+N
Sbjct: 164 SLYPNSSSPSGTSLIRQPRNSNVTTSNSGNGFPTNDSQMPGFLLNLSKSGLTPNESN 220
>sp|P25623|SYP1_YEAST Suppressor of yeast profilin deletion
Length = 870
Score = 32.3 bits (72), Expect = 1.6
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = -2
Query: 791 LSPIKTPKSIDTR-KAKLPKAKNLFPNS---STPRQNNALKSQSNDGNNTPK---VSTKL 633
L P TPK++D A P A+ P+ STP+Q++ ++ D +N PK +S
Sbjct: 419 LPPHATPKNVDAPVTADTPPAQTFTPSEVPPSTPQQSSPPTAKEPDSSNLPKTVPISISQ 478
Query: 632 PGLTTELLKKLFPEE 588
P L + K P E
Sbjct: 479 PPLQPQSKTKPLPVE 493
>sp|Q10484|YDFC_SCHPO Hypothetical protein C17C9.12 in chromosome I
Length = 319
Score = 30.4 bits (67), Expect = 6.0
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -2
Query: 782 IKTPKSIDTRKAKLPKAKNLFPNSSTPRQNNALKSQSNDGNNTPKVSTKLPGL 624
+K P + PK +++ +S +NNAL+S +N NNT + + P +
Sbjct: 213 VKAPTATVAENEPYPKPQSVPTTTSPNNENNALRSTANVINNTRQSTATSPSM 265
>sp|P50275|ASE1_YEAST Anaphase spindle elongation protein
Length = 885
Score = 30.4 bits (67), Expect = 6.0
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = -2
Query: 779 KTPKSIDTRKAKLPKAKNLFPNSSTPRQNNALKSQSNDGNNTPKVSTKLPGLT 621
K P S+ ++KA L AK S PR + LKS + V LPGLT
Sbjct: 200 KKPLSLLSKKAALDTAKKFVLGSFLPRLRDYLKSLITLKHLIQSVKENLPGLT 252
>sp|Q02945|VP4_ROTEH Outer capsid protein VP4 (Hemagglutinin) (Outer layer protein VP4)
[Contains: Outer capsid protein VP8; Outer capsid
protein VP5]
Length = 776
Score = 30.0 bits (66), Expect = 7.8
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = -2
Query: 422 EKKKLLGSVSAALHSISDRVSSVDLAD---STAETVAPKMDIDNELSNLS 282
+K KL S+S +S+SD SSV S + +V+ D+ N+L+++S
Sbjct: 553 KKSKLASSISTLTNSLSDASSSVSRNSSIRSVSSSVSAWTDVSNQLTDIS 602
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,469,718
Number of Sequences: 369166
Number of extensions: 1415363
Number of successful extensions: 4343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4334
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)