Planaria EST Database

DrC_00598

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00598
         (377 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48614|WN10B_MOUSE  Wnt-10b protein precursor (Wnt-12)          30   1.3  
sp|O00744|WN1B_HUMAN  Wnt-10b protein precursor (Wnt-12)           30   1.3  
sp|P49339|WNT11_CHICK  Wnt-11 protein precursor                    30   1.7  
sp|P51891|WNT11_COTJA  Wnt-11 protein precursor                    30   1.7  
sp|Q06442|WNT5A_AMBME  Wnt-5a protein precursor                    30   2.2  
sp|P41221|WNT5A_HUMAN  Wnt-5a protein precursor                    30   2.2  
sp|Q9QXQ7|WNT5A_RAT  Wnt-5a protein precursor                      30   2.2  
sp|P31286|WNT5A_XENLA  Wnt-5a protein precursor (XWnt-5a)          30   2.2  
sp|O13267|WNT5A_PLEWA  Wnt-5a protein precursor (PWnt-5a)          30   2.2  
sp|P22725|WNT5A_MOUSE  Wnt-5a protein precursor                    30   2.2  

>sp|P48614|WN10B_MOUSE Wnt-10b protein precursor (Wnt-12)
          Length = 389

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 16  KRCHWNCRWCCYSLCSK 66
           +RCH    WCCY LC +
Sbjct: 362 ERCHCRFHWCCYVLCDE 378

>sp|O00744|WN1B_HUMAN Wnt-10b protein precursor (Wnt-12)
          Length = 389

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 16  KRCHWNCRWCCYSLCSK 66
           +RCH    WCCY LC +
Sbjct: 362 ERCHCRFHWCCYVLCDE 378

>sp|P49339|WNT11_CHICK Wnt-11 protein precursor
          Length = 354

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 16  KRCHWNCRWCCYSLCSK 66
           +RCH    WCCY  C K
Sbjct: 327 ERCHCKYHWCCYVTCKK 343

>sp|P51891|WNT11_COTJA Wnt-11 protein precursor
          Length = 354

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 16  KRCHWNCRWCCYSLCSK 66
           +RCH    WCCY  C K
Sbjct: 327 ERCHCKYHWCCYVTCKK 343

>sp|Q06442|WNT5A_AMBME Wnt-5a protein precursor
          Length = 359

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 16  KRCHWNCRWCCYSLCSK 66
           +RCH    WCCY  C K
Sbjct: 332 ERCHCKFHWCCYVKCKK 348

>sp|P41221|WNT5A_HUMAN Wnt-5a protein precursor
          Length = 365

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 16  KRCHWNCRWCCYSLCSK 66
           +RCH    WCCY  C K
Sbjct: 338 ERCHCKFHWCCYVKCKK 354

>sp|Q9QXQ7|WNT5A_RAT Wnt-5a protein precursor
          Length = 379

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 16  KRCHWNCRWCCYSLCSK 66
           +RCH    WCCY  C K
Sbjct: 352 ERCHCKFHWCCYVKCKK 368

>sp|P31286|WNT5A_XENLA Wnt-5a protein precursor (XWnt-5a)
          Length = 380

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 16  KRCHWNCRWCCYSLCSK 66
           +RCH    WCCY  C K
Sbjct: 353 ERCHCKFHWCCYVKCKK 369

>sp|O13267|WNT5A_PLEWA Wnt-5a protein precursor (PWnt-5a)
          Length = 359

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 16  KRCHWNCRWCCYSLCSK 66
           +RCH    WCCY  C K
Sbjct: 332 ERCHCKFHWCCYVKCKK 348

>sp|P22725|WNT5A_MOUSE Wnt-5a protein precursor
          Length = 379

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 16  KRCHWNCRWCCYSLCSK 66
           +RCH    WCCY  C K
Sbjct: 352 ERCHCKFHWCCYVKCKK 368

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,267,807
Number of Sequences: 369166
Number of extensions: 445563
Number of successful extensions: 1315
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00598

  1. Dr_sW_015_J12
  2. Dr_sW_027_K13