Planaria EST Database

DrC_00575

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00575
         (638 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P22224|SEC15_YEAST  Exocyst complex component SEC15             31   2.3  
sp|Q9ZLL4|MUTS2_HELPJ  MutS2 protein                               30   6.8  

>sp|P22224|SEC15_YEAST Exocyst complex component SEC15
          Length = 910

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
 Frame = -1

Query: 551 NKAVIKSSKVQIKKNIFKKVTSTSCKI*QVISVIHLQIKARYKI---------QNIFSLQ 399
           N+ ++K       K I  K++  +  I +V+ ++ L  K +  I         QN+ SL+
Sbjct: 143 NELIVKKQMYVNNKKISLKISEATILITKVVRILELSSKCQELITERKFFKVLQNLDSLE 202

Query: 398 SLDAKELNNSHFQT*VNILHS 336
            L  +E  N +FQ  + I +S
Sbjct: 203 KLYLQEFKNYNFQFLIEIYNS 223

>sp|Q9ZLL4|MUTS2_HELPJ MutS2 protein
          Length = 762

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = -1

Query: 572 NKHTKKFNKAVIKSSKVQIKKNIFKKVTSTSCKI*QVISVIHLQIKARYKIQNIFSLQSL 393
           +K T   +K + K+S++  K         T  +I Q+I+   +  KARYK +++  +Q L
Sbjct: 586 SKDTSSMHKEIHKASEILNKHK-------TDQEIPQIITSFQINEKARYKNESVLVIQIL 638

Query: 392 D 390
           D
Sbjct: 639 D 639

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,457,841
Number of Sequences: 369166
Number of extensions: 1417078
Number of successful extensions: 3080
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3080
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00575

  1. Dr_sW_015_A09
  2. Dr_sW_011_H03