Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_A09
(638 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22224|SEC15_YEAST Exocyst complex component SEC15 31 2.3
sp|Q9ZLL4|MUTS2_HELPJ MutS2 protein 30 6.8
>sp|P22224|SEC15_YEAST Exocyst complex component SEC15
Length = 910
Score = 31.2 bits (69), Expect = 2.3
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = -1
Query: 551 NKAVIKSSKVQIKKNIFKKVTSTSCKI*QVISVIHLQIKARYKI---------QNIFSLQ 399
N+ ++K K I K++ + I +V+ ++ L K + I QN+ SL+
Sbjct: 143 NELIVKKQMYVNNKKISLKISEATILITKVVRILELSSKCQELITERKFFKVLQNLDSLE 202
Query: 398 SLDAKELNNSHFQT*VNILHS 336
L +E N +FQ + I +S
Sbjct: 203 KLYLQEFKNYNFQFLIEIYNS 223
>sp|Q9ZLL4|MUTS2_HELPJ MutS2 protein
Length = 762
Score = 29.6 bits (65), Expect = 6.8
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -1
Query: 572 NKHTKKFNKAVIKSSKVQIKKNIFKKVTSTSCKI*QVISVIHLQIKARYKIQNIFSLQSL 393
+K T +K + K+S++ K T +I Q+I+ + KARYK +++ +Q L
Sbjct: 586 SKDTSSMHKEIHKASEILNKHK-------TDQEIPQIITSFQINEKARYKNESVLVIQIL 638
Query: 392 D 390
D
Sbjct: 639 D 639
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,457,841
Number of Sequences: 369166
Number of extensions: 1417078
Number of successful extensions: 3080
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3080
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)