Planaria EST Database


DrC_00569

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00569
         (1313 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96WL3|URE2_CANAL  Protein URE2                                 34   1.1  
sp|P48361|ASK10_YEAST  Protein ASK10                               33   2.4  
sp|P65283|LIPA_MYCTU  Lipoyl synthase (Lipoic acid synthase)...    32   4.1  
sp|P34127|MYBH_DICDI  Myb-like protein                             32   4.1  
>sp|Q96WL3|URE2_CANAL Protein URE2
          Length = 344

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
 Frame = +2

Query: 164 NVSPATNNTEQMGANIPDNLQNNQSMQRSIMPTANKSIVNGNIPIPTKEQIQTVQQV--- 334
           N++  +NN+     N  +N  NNQS+  ++  T N +    N+    K    T QQ    
Sbjct: 11  NMNDNSNNSNNSNNNNTNNNNNNQSVNVNVNNTNNNTQTISNLSAGLKSVSLTDQQQNEV 70

Query: 335 -IGSIKRNYPQE----MQNDKFTEWLKNNPSYKATFQLYSLKKSPS 457
            +  +++   QE     Q  + T++ +N P+    F L+S + +P+
Sbjct: 71  NLNLLQQQLHQEASTQQQQSRITQFFQNQPT--EGFTLFSHRSAPN 114
>sp|P48361|ASK10_YEAST Protein ASK10
          Length = 1146

 Score = 32.7 bits (73), Expect = 2.4
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
 Frame = +2

Query: 119 DIANLQRMQTSSLLNNVSPATNNTEQMGANIPDNLQNNQSMQRSIMPTANKSIVNGNIPI 298
           D A+    ++S  L ++ P +    +  ++I   + NNQ+ +  +  T  +S    N+PI
Sbjct: 27  DDASSIHSKSSQYLMDILPDSMTLNESVSSI---VANNQAKEFILPETDERSPYFINVPI 83

Query: 299 P---------TKEQIQTVQQVIGSIKRNYPQEMQNDKFTEWLK 400
           P         TK+ +   + + G   + YP ++  D+F +W K
Sbjct: 84  PKAQPTSTTETKKPLAGDEAIDGQFVKEYPTDILVDRFYKWKK 126
>sp|P65283|LIPA_MYCTU Lipoyl synthase (Lipoic acid synthase) (Lipoate synthase)
           (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion
           protein lipA) (Lip-syn)
 sp|P65284|LIPA_MYCBO Lipoyl synthase (Lipoic acid synthase) (Lipoate synthase)
           (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion
           protein lipA) (Lip-syn)
          Length = 311

 Score = 32.0 bits (71), Expect = 4.1
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 782 LVDIGC-IEIVIQILRRLTNPHCILLWIVTGEFV*FERFTANCHLPGLLDGWLI 624
           L D GC I  + Q LR     H +  W+   EFV F RF       G+L G L+
Sbjct: 236 LRDAGCDIVTITQYLRPSARHHPVERWVKPEEFVQFARFAEGLGFAGVLAGPLV 289
>sp|P34127|MYBH_DICDI Myb-like protein
          Length = 451

 Score = 32.0 bits (71), Expect = 4.1
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +2

Query: 149 SSLLNNVSPATNNTEQMGANIPDNLQNNQSMQRSIMPTANKSIVNGNIPIPTKEQ 313
           ++L+NN++   NN   M  N+ +N  NN +M  +I    N +I N N P   K++
Sbjct: 97  NNLINNIN---NNINNMNNNMNNN-NNNNNMNNNINNNGNSNISNNNTPKVEKKK 147
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,407,101
Number of Sequences: 369166
Number of extensions: 2172131
Number of successful extensions: 4887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4876
length of database: 68,354,980
effective HSP length: 114
effective length of database: 47,295,190
effective search space used: 15276346370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00569

  1. Dr_sW_014_M17
  2. Dr_sW_026_A09