Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_M17
(734 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96WL3|URE2_CANAL Protein URE2 34 0.46
sp|P48361|ASK10_YEAST Protein ASK10 33 1.0
sp|P34127|MYBH_DICDI Myb-like protein 32 1.8
sp|Q14789|GOGB1_HUMAN Golgin subfamily B member 1 (Giantin)... 30 8.7
sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 ... 30 8.7
sp|Q9Z702|MURG_CHLPN UDP-N-acetylglucosamine--N-acetylmuram... 30 8.7
sp|Q01443|SSP2_PLAYO Sporozoite surface protein 2 precursor 30 8.7
>sp|Q96WL3|URE2_CANAL Protein URE2
Length = 344
Score = 33.9 bits (76), Expect = 0.46
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Frame = +2
Query: 164 NVSPATNNTEQMGANIPDNLQNNQSMQRSIMPTANKSIVNGNIPIPTKEQIQTVQQV--- 334
N++ +NN+ N +N NNQS+ ++ T N + N+ K T QQ
Sbjct: 11 NMNDNSNNSNNSNNNNTNNNNNNQSVNVNVNNTNNNTQTISNLSAGLKSVSLTDQQQNEV 70
Query: 335 -IGSIKRNYPQE----MQNDKFTEWLKNNPSYKATFQLYSLKKSPS 457
+ +++ QE Q + T++ +N P+ F L+S + +P+
Sbjct: 71 NLNLLQQQLHQEASTQQQQSRITQFFQNQPT--EGFTLFSHRSAPN 114
>sp|P48361|ASK10_YEAST Protein ASK10
Length = 1146
Score = 32.7 bits (73), Expect = 1.0
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Frame = +2
Query: 119 DIANLQRMQTSSLLNNVSPATNNTEQMGANIPDNLQNNQSMQRSIMPTANKSIVNGNIPI 298
D A+ ++S L ++ P + + ++I + NNQ+ + + T +S N+PI
Sbjct: 27 DDASSIHSKSSQYLMDILPDSMTLNESVSSI---VANNQAKEFILPETDERSPYFINVPI 83
Query: 299 P---------TKEQIQTVQQVIGSIKRNYPQEMQNDKFTEWLK 400
P TK+ + + + G + YP ++ D+F +W K
Sbjct: 84 PKAQPTSTTETKKPLAGDEAIDGQFVKEYPTDILVDRFYKWKK 126
>sp|P34127|MYBH_DICDI Myb-like protein
Length = 451
Score = 32.0 bits (71), Expect = 1.8
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +2
Query: 149 SSLLNNVSPATNNTEQMGANIPDNLQNNQSMQRSIMPTANKSIVNGNIPIPTKEQ 313
++L+NN++ NN M N+ +N NN +M +I N +I N N P K++
Sbjct: 97 NNLINNIN---NNINNMNNNMNNN-NNNNNMNNNINNNGNSNISNNNTPKVEKKK 147
>sp|Q14789|GOGB1_HUMAN Golgin subfamily B member 1 (Giantin) (Macrogolgin) (372 kDa Golgi
complex-associated protein) (GCP372)
Length = 3259
Score = 29.6 bits (65), Expect = 8.7
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Frame = +2
Query: 179 TNNTEQMGANIPDNLQNNQSMQRSIMPTANKSIVNGNIPIP-------TKEQIQTVQQVI 337
TN TE+ +IP + S+ S PT ++S+ + P + ++I Q I
Sbjct: 1783 TNVTEEGTQSIPGETEEQDSLSMSTRPTCSESVPSAKSANPAVSKDFSSHDEINNYLQQI 1842
Query: 338 GSIKRNY----PQEMQNDKFTEWLKN 403
+K ++ +N +F++ L+N
Sbjct: 1843 DQLKERIAGLEEEKQKNKEFSQTLEN 1868
>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 (SWI/SNF complex component
SNF2) (Regulatory protein SWI2) (Regulatory protein
GAM1) (Transcription factor TYE3)
Length = 1703
Score = 29.6 bits (65), Expect = 8.7
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 16/81 (19%)
Frame = +2
Query: 134 QRMQTSSLLN--NVSPATNNTEQMGANIPDNLQ-NNQSMQRSIMPTANKSIVNGNI---- 292
QR + LN N SP N + A PDN NN ++ S + N+S+ NI
Sbjct: 135 QRQSSVGSLNATNFSPTPANNGENAAEKPDNSNHNNLNLNNSELQPQNRSLQEHNIQDSN 194
Query: 293 ---------PIPTKEQIQTVQ 328
P+P + Q+Q Q
Sbjct: 195 VMPGSQINSPMPQQAQMQQAQ 215
>sp|Q9Z702|MURG_CHLPN UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase
(Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
transferase)
Length = 357
Score = 29.6 bits (65), Expect = 8.7
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +3
Query: 576 NNPQLRVGISSNQIISNQPTVQQP-----RQMTICCESLKSDK 689
N+P L+ GIS +I S PTV P R +++C LK+ K
Sbjct: 45 NHPSLQQGISYREIPSGLPTVLNPIKIMSRTLSLCSGYLKARK 87
>sp|Q01443|SSP2_PLAYO Sporozoite surface protein 2 precursor
Length = 827
Score = 29.6 bits (65), Expect = 8.7
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +2
Query: 161 NNVSPATNNTEQMGANIPDNLQNNQSMQRSIMPTANKSIVNGNIPIPTKEQI 316
+NV P Q G NIP NL N S P N + N N + +K+ I
Sbjct: 645 SNVIPILPIIPQKGNNIPSNLPENPSDSEVEYPRPNDNGENSNNTMKSKKNI 696
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,712,736
Number of Sequences: 369166
Number of extensions: 1211111
Number of successful extensions: 3086
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3075
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)