Planarian EST Database

DrC_00553

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00553 ATAGCTATTGCTAATTTGTGTCTTATTAATAATTGTTTGGGCGATCTAACCCAGCGTCAG AAAGAAAAAATTCTCAATGACCATAACAATTATAGACAGATGATAGCAAATGGAACCTTA AGAAATCAACCTTCAGCGACAAATATGATGAAATTAATTTGGAGTGATGAATCAGCAGCA AAAGCACAAGCCTATGCAAACAAATGTAAATTTGCTCATAACAGAAAGAAAGATCGAAAA TATGGCGATTATGACTATGTAGGGCAAAATATGGCGATGTACTACGGTTTCCCATTTTGA TCATGGTGTTAAATCCTGGTTTAATGAGCAAAAGGATTACAGCTATGATTCTAATCAGTG TTTCAGAAATATGTGTGGACATTATACACAAATTGTATGGGCTGATACACAAGAAATTGG TTGTGGGTTGAGTTTATGCAATGGGTATCAAACTATGCTAGTTTGTAATTATGCACCGGG AGGAAATATTATCTCGCACCTGCCTTATAAAAGTGGATATACATGTTCAAATTTGCCCCG AAACAACACGATGCGTCGGTGGACTTTTGCGAATAATTTTGTGACATACATATTTCACTA ATTAAATATAAATAATAAATTTGT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00553
         (624 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CWG1|GLIP1_MOUSE  Glioma pathogenesis-related protein 1...    81   2e-15
sp|P48060|GLIP1_HUMAN  Glioma pathogenesis-related protein 1...    80   3e-15
sp|P35792|PR12_HORVU  Pathogenesis-related protein PRB1-2 pr...    78   2e-14
sp|Q05968|PR1_HORVU  Pathogenesis-related protein 1 precursor      76   6e-14
sp|P35793|PR13_HORVU  Pathogenesis-related protein PRB1-3 pr...    76   8e-14
sp|Q04108|PR04_LYCES  Pathogenesis-related leaf protein 4 pr...    75   2e-13
sp|P09042|PR1C_TOBAC  Pathogenesis-related protein 1C precur...    73   5e-13
sp|P07053|PR1B_TOBAC  Pathogenesis-related protein 1B precur...    71   2e-12
sp|P11670|PRB1_TOBAC  Basic form of pathogenesis-related pro...    71   2e-12
sp|P33154|PR1_ARATH  Pathogenesis-related protein 1 precurso...    70   3e-12

>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
          Length = 255

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 35/81 (43%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
 Frame = +2

Query: 308 VKSWFNEQKDYSYDSNQCFRNMCGHYTQIVWADTQEIGCGLSLC-NGYQTMLVCNYAPGG 484
           + +W+ E K Y + + +C R++CGHYTQ+VWAD+ ++GC + LC NG     +C+Y P G
Sbjct: 112 ISAWYEEIKHYDFSTRKC-RHVCGHYTQVVWADSYKLGCAVQLCPNG--ANFICDYGPAG 168

Query: 485 NIISHLPYKSGYTCSNLPRNN 547
           N  +  PYK G TCS+ P+++
Sbjct: 169 NYPT-WPYKQGATCSDCPKDD 188


 Score = 34.3 bits (77), Expect = 0.26
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 82  HNNYRQMIANGTLRNQPSATNMMKLIWSDESAAKAQAYANKCKFAHN-RKKDRKYGDYDY 258
           HN  R  ++       P A NM+ + W  + A  A+A+   C+F HN +   R + ++  
Sbjct: 41  HNQLRSKVS-------PPARNMLYMSWDPKLAQIAKAWTKSCEFKHNPQLHSRIHPNFTA 93

Query: 259 VGQNM 273
           +G+N+
Sbjct: 94  LGENI 98

>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
           protein)
          Length = 266

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
 Frame = +2

Query: 308 VKSWFNEQKDYSYDSNQCFRNMCGHYTQIVWADTQEIGCGLSLC---NGYQTM-----LV 463
           + +W++E +DY + +  C + +CGHYTQ+VWAD+ ++GC +  C   +G+  +      +
Sbjct: 114 ITNWYDEIQDYDFKTRIC-KKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFI 172

Query: 464 CNYAPGGNIISHLPYKSGYTCSNLPRNN 547
           CNY PGGN  +  PYK G TCS  P N+
Sbjct: 173 CNYGPGGNYPT-WPYKRGATCSACPNND 199


 Score = 37.0 bits (84), Expect = 0.041
 Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
 Frame = +1

Query: 7   IANLCLINNCLGDLTQRQKEKILND----HNNYRQMIANGTLRNQPSATNMMKLIWSDES 174
           ++N     N L D+   + E  + D    HN +R  +       +P+A++M+ + W    
Sbjct: 15  VSNYSHTANILPDI---ENEDFIKDCVRIHNKFRSEV-------KPTASDMLYMTWDPAL 64

Query: 175 AAKAQAYANKCKFAHN---RKKDRKYGDYDYVGQNM 273
           A  A+A+A+ C+F+HN   +   + + ++  +G+N+
Sbjct: 65  AQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENI 100

>sp|P35792|PR12_HORVU Pathogenesis-related protein PRB1-2 precursor
          Length = 164

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
 Frame = +2

Query: 308 VKSWFNEQKDYSYDSNQCFRN-MCGHYTQIVWADTQEIGCGLSLCNGYQ-TMLVCNYAPG 481
           V SW NE+KDY+Y SN C    +CGHYTQ+VW  +  IGC   +CN  +   + CNY P 
Sbjct: 96  VNSWVNEKKDYNYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPR 155

Query: 482 GNIISHLPY 508
           GNI+   PY
Sbjct: 156 GNIVGQKPY 164

>sp|Q05968|PR1_HORVU Pathogenesis-related protein 1 precursor
          Length = 164

 Score = 76.3 bits (186), Expect = 6e-14
 Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
 Frame = +2

Query: 308 VKSWFNEQKDYSYDSNQCFRN-MCGHYTQIVWADTQEIGCGLSLCNGYQ-TMLVCNYAPG 481
           V SW +E+KDY Y SN C    +CGHYTQ+VW  +  IGC   +CN  +   + CNY P 
Sbjct: 96  VNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPR 155

Query: 482 GNIISHLPY 508
           GNII   PY
Sbjct: 156 GNIIGQKPY 164

>sp|P35793|PR13_HORVU Pathogenesis-related protein PRB1-3 precursor (PR-1B) (HV-8)
          Length = 164

 Score = 75.9 bits (185), Expect = 8e-14
 Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
 Frame = +2

Query: 308 VKSWFNEQKDYSYDSNQCFRN-MCGHYTQIVWADTQEIGCGLSLCNGYQ-TMLVCNYAPG 481
           V SW +E+KDY Y SN C    +CGHYTQ+VW  +  IGC   +CN  +   + CNY P 
Sbjct: 96  VNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPR 155

Query: 482 GNIISHLPY 508
           GNI+   PY
Sbjct: 156 GNIVGQKPY 164

>sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 precursor (P4)
          Length = 159

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
 Frame = +2

Query: 308 VKSWFNEQKDYSYDSNQCFRN-MCGHYTQIVWADTQEIGCGLSLCNGYQTMLVCNYAPGG 484
           V+ W +E+ DY+Y +NQC    MCGHYTQ+VW ++  +GCG + CN     + CNY P G
Sbjct: 92  VQLWVSERPDYNYATNQCVGGKMCGHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVG 151

Query: 485 NIISHLPY 508
           N +   PY
Sbjct: 152 NWVGERPY 159

>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
          Length = 168

 Score = 73.2 bits (178), Expect = 5e-13
 Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
 Frame = +2

Query: 308 VKSWFNEQKDYSYDSNQCFRN-MCGHYTQIVWADTQEIGCGLSLCNGYQTMLVCNYAPGG 484
           V+ W NE++ Y++DSN C +  +CGHYTQ+VW ++  +GC    CN    ++ CNY P G
Sbjct: 101 VEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYIVSCNYDPPG 160

Query: 485 NIISHLPY 508
           N+I   PY
Sbjct: 161 NVIGKSPY 168

>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
          Length = 168

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
 Frame = +2

Query: 308 VKSWFNEQKDYSYDSNQCFRN-MCGHYTQIVWADTQEIGCGLSLCNGYQTMLVCNYAPGG 484
           V+ W +E++ Y +DSN C +  +CGHYTQ+VW ++  +GC    CN    ++ CNY P G
Sbjct: 101 VEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVKCNNGGYVVSCNYDPPG 160

Query: 485 NIISHLPY 508
           N+I   PY
Sbjct: 161 NVIGQSPY 168

>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 precursor (PRP 1)
          Length = 177

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 28/67 (41%), Positives = 39/67 (58%)
 Frame = +2

Query: 308 VKSWFNEQKDYSYDSNQCFRNMCGHYTQIVWADTQEIGCGLSLCNGYQTMLVCNYAPGGN 487
           VK W +E++ Y Y+SN C   +CGHYTQ+VW ++  +GC     N     + CNY P GN
Sbjct: 93  VKMWVDEKRFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCARVRSNNGWFFITCNYDPPGN 152

Query: 488 IISHLPY 508
            I   P+
Sbjct: 153 FIGQRPF 159

>sp|P33154|PR1_ARATH Pathogenesis-related protein 1 precursor (PR-1)
          Length = 161

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 28/67 (41%), Positives = 41/67 (61%)
 Frame = +2

Query: 308 VKSWFNEQKDYSYDSNQCFRNMCGHYTQIVWADTQEIGCGLSLCNGYQTMLVCNYAPGGN 487
           V  W +E+ +Y+Y +N C   +CGHYTQ+VW  +  +GC    CN   T++ CNY P GN
Sbjct: 96  VNMWVSEKANYNYAANTC-NGVCGHYTQVVWRKSVRLGCAKVRCNNGGTIISCNYDPRGN 154

Query: 488 IISHLPY 508
            ++  PY
Sbjct: 155 YVNEKPY 161

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,661,580
Number of Sequences: 369166
Number of extensions: 1563616
Number of successful extensions: 3793
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3690
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00553

Planaria EST Database

DrC_00553

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail