Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_F21
(624 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1... 79 1e-14
sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1... 78 2e-14
sp|P35792|PR12_HORVU Pathogenesis-related protein PRB1-2 pr... 76 8e-14
sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 pr... 75 1e-13
sp|Q05968|PR1_HORVU Pathogenesis-related protein 1 precursor 74 3e-13
sp|P35793|PR13_HORVU Pathogenesis-related protein PRB1-3 pr... 74 4e-13
sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precur... 74 4e-13
sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precur... 72 1e-12
sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related pro... 72 1e-12
sp|P33154|PR1_ARATH Pathogenesis-related protein 1 precurso... 71 3e-12
>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
Length = 255
Score = 78.6 bits (192), Expect = 1e-14
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = +2
Query: 308 VKFWFNEQKDYSYDSNQCFRNMCGHYTQIVWADTQEIGCGLSLC-NGYQTMLVCNYAPGG 484
+ W+ E K Y + + +C R++CGHYTQ+VWAD+ ++GC + LC NG +C+Y P G
Sbjct: 112 ISAWYEEIKHYDFSTRKC-RHVCGHYTQVVWADSYKLGCAVQLCPNG--ANFICDYGPAG 168
Query: 485 NIISHLPYESGYTCSNLPRNN 547
N + PY+ G TCS+ P+++
Sbjct: 169 NYPT-WPYKQGATCSDCPKDD 188
Score = 34.3 bits (77), Expect = 0.26
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 82 HNNYRQMIANGTLRNQPSATNMMKLIWSDESAAKAQAYANKCKFAHN-RKKDRKYGDYDY 258
HN R ++ P A NM+ + W + A A+A+ C+F HN + R + ++
Sbjct: 41 HNQLRSKVS-------PPARNMLYMSWDPKLAQIAKAWTKSCEFKHNPQLHSRIHPNFTA 93
Query: 259 VGQNM 273
+G+N+
Sbjct: 94 LGENI 98
>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
protein)
Length = 266
Score = 77.8 bits (190), Expect = 2e-14
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 8/85 (9%)
Frame = +2
Query: 317 WFNEQKDYSYDSNQCFRNMCGHYTQIVWADTQEIGCGLSLC---NGYQTM-----LVCNY 472
W++E +DY + + C + +CGHYTQ+VWAD+ ++GC + C +G+ + +CNY
Sbjct: 117 WYDEIQDYDFKTRIC-KKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNY 175
Query: 473 APGGNIISHLPYESGYTCSNLPRNN 547
PGGN + PY+ G TCS P N+
Sbjct: 176 GPGGNYPT-WPYKRGATCSACPNND 199
Score = 37.0 bits (84), Expect = 0.041
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Frame = +1
Query: 7 IANLCLINNCLGDLTQRQKEKILND----HNNYRQMIANGTLRNQPSATNMMKLIWSDES 174
++N N L D+ + E + D HN +R + +P+A++M+ + W
Sbjct: 15 VSNYSHTANILPDI---ENEDFIKDCVRIHNKFRSEV-------KPTASDMLYMTWDPAL 64
Query: 175 AAKAQAYANKCKFAHN---RKKDRKYGDYDYVGQNM 273
A A+A+A+ C+F+HN + + + ++ +G+N+
Sbjct: 65 AQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENI 100
>sp|P35792|PR12_HORVU Pathogenesis-related protein PRB1-2 precursor
Length = 164
Score = 75.9 bits (185), Expect = 8e-14
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +2
Query: 308 VKFWFNEQKDYSYDSNQCFRN-MCGHYTQIVWADTQEIGCGLSLCNGYQ-TMLVCNYAPG 481
V W NE+KDY+Y SN C +CGHYTQ+VW + IGC +CN + + CNY P
Sbjct: 96 VNSWVNEKKDYNYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPR 155
Query: 482 GNIISHLPY 508
GNI+ PY
Sbjct: 156 GNIVGQKPY 164
>sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 precursor (P4)
Length = 159
Score = 75.5 bits (184), Expect = 1e-13
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = +2
Query: 308 VKFWFNEQKDYSYDSNQCFRN-MCGHYTQIVWADTQEIGCGLSLCNGYQTMLVCNYAPGG 484
V+ W +E+ DY+Y +NQC MCGHYTQ+VW ++ +GCG + CN + CNY P G
Sbjct: 92 VQLWVSERPDYNYATNQCVGGKMCGHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVG 151
Query: 485 NIISHLPY 508
N + PY
Sbjct: 152 NWVGERPY 159
>sp|Q05968|PR1_HORVU Pathogenesis-related protein 1 precursor
Length = 164
Score = 73.9 bits (180), Expect = 3e-13
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 308 VKFWFNEQKDYSYDSNQCFRN-MCGHYTQIVWADTQEIGCGLSLCNGYQ-TMLVCNYAPG 481
V W +E+KDY Y SN C +CGHYTQ+VW + IGC +CN + + CNY P
Sbjct: 96 VNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPR 155
Query: 482 GNIISHLPY 508
GNII PY
Sbjct: 156 GNIIGQKPY 164
>sp|P35793|PR13_HORVU Pathogenesis-related protein PRB1-3 precursor (PR-1B) (HV-8)
Length = 164
Score = 73.6 bits (179), Expect = 4e-13
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 308 VKFWFNEQKDYSYDSNQCFRN-MCGHYTQIVWADTQEIGCGLSLCNGYQ-TMLVCNYAPG 481
V W +E+KDY Y SN C +CGHYTQ+VW + IGC +CN + + CNY P
Sbjct: 96 VNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPR 155
Query: 482 GNIISHLPY 508
GNI+ PY
Sbjct: 156 GNIVGQKPY 164
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
Length = 168
Score = 73.6 bits (179), Expect = 4e-13
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = +2
Query: 308 VKFWFNEQKDYSYDSNQCFRN-MCGHYTQIVWADTQEIGCGLSLCNGYQTMLVCNYAPGG 484
V+ W NE++ Y++DSN C + +CGHYTQ+VW ++ +GC CN ++ CNY P G
Sbjct: 101 VEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYIVSCNYDPPG 160
Query: 485 NIISHLPY 508
N+I PY
Sbjct: 161 NVIGKSPY 168
>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
Length = 168
Score = 71.6 bits (174), Expect = 1e-12
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = +2
Query: 308 VKFWFNEQKDYSYDSNQCFRN-MCGHYTQIVWADTQEIGCGLSLCNGYQTMLVCNYAPGG 484
V+ W +E++ Y +DSN C + +CGHYTQ+VW ++ +GC CN ++ CNY P G
Sbjct: 101 VEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVKCNNGGYVVSCNYDPPG 160
Query: 485 NIISHLPY 508
N+I PY
Sbjct: 161 NVIGQSPY 168
>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 precursor (PRP 1)
Length = 177
Score = 71.6 bits (174), Expect = 1e-12
Identities = 28/67 (41%), Positives = 39/67 (58%)
Frame = +2
Query: 308 VKFWFNEQKDYSYDSNQCFRNMCGHYTQIVWADTQEIGCGLSLCNGYQTMLVCNYAPGGN 487
VK W +E++ Y Y+SN C +CGHYTQ+VW ++ +GC N + CNY P GN
Sbjct: 93 VKMWVDEKRFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCARVRSNNGWFFITCNYDPPGN 152
Query: 488 IISHLPY 508
I P+
Sbjct: 153 FIGQRPF 159
>sp|P33154|PR1_ARATH Pathogenesis-related protein 1 precursor (PR-1)
Length = 161
Score = 70.9 bits (172), Expect = 3e-12
Identities = 28/67 (41%), Positives = 41/67 (61%)
Frame = +2
Query: 308 VKFWFNEQKDYSYDSNQCFRNMCGHYTQIVWADTQEIGCGLSLCNGYQTMLVCNYAPGGN 487
V W +E+ +Y+Y +N C +CGHYTQ+VW + +GC CN T++ CNY P GN
Sbjct: 96 VNMWVSEKANYNYAANTC-NGVCGHYTQVVWRKSVRLGCAKVRCNNGGTIISCNYDPRGN 154
Query: 488 IISHLPY 508
++ PY
Sbjct: 155 YVNEKPY 161
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,169,022
Number of Sequences: 369166
Number of extensions: 1545479
Number of successful extensions: 3620
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3530
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)