Planaria EST Database

DrC_00551

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00551
         (906 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55281|CAD17_RAT  Cadherin-17 precursor (Liver-intestine-...    33   1.1  
sp|P36099|YKD0_YEAST  Hypothetical 23.0 kDa protein in IXR1-...    33   1.1  
sp|P47040|BTN1_YEAST  BTN1 protein precursor                       32   1.9  
sp|Q03557|GATH_YEAST  Probable glutamyl-tRNA(Gln) amidotrans...    31   4.2  
sp|P42359|YSC6_STRGC  Hypothetical zinc metalloproteinase in...    30   9.3  

>sp|P55281|CAD17_RAT Cadherin-17 precursor (Liver-intestine-cadherin) (LI-cadherin)
          Length = 827

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
 Frame = +1

Query: 133 KVIIVIRNDLYNITPEI--IIGENATTYGNCTSFD----RKLWLINGEIEIFFNWIRDPD 294
           +V+  I+N  YN+   +  + G+N  ++ + TS D      +W     +EI  N + DP 
Sbjct: 196 QVLDPIKNPYYNLVVSVKDMGGQNENSFSDTTSVDITVRENIWKAPEPVEIREN-LTDPH 254

Query: 295 PYEFGEIGWSSVGA 336
           P +  ++ W+  GA
Sbjct: 255 PIKITQVQWNDPGA 268

>sp|P36099|YKD0_YEAST Hypothetical 23.0 kDa protein in IXR1-TFA1 intergenic region
          Length = 201

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
 Frame = -1

Query: 183 YFWCNIV*IISDYYYNFHFSNYTNTVLIFFIK-------YYIFERCSIFINRFIMICQRM 25
           +++C IV ++  YYY +++  Y  + +IFF+K        YIF   SI+   F   C+R 
Sbjct: 12  FYYCIIVLLLYYYYYYYYYYYYGMSSIIFFLKIKKKIVQIYIFIYYSIWF--FFFKCRRW 69

Query: 24  TIDVRN 7
              V N
Sbjct: 70  LCFVYN 75

>sp|P47040|BTN1_YEAST BTN1 protein precursor
          Length = 408

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
 Frame = -2

Query: 638 PVPVKSLTFTSLNACILMF-----SNSNLTFSKVELINIEEFDNDISYPILVSQT*KSPD 474
           PV +  L F+ L    L +     +++NLT+  ++ I+  E D  + +P+  + T     
Sbjct: 151 PVKLTLLVFSLLPFAFLFYFKLESNDTNLTYQSLQQIDEAEDDQLVPFPVAFTHT----- 205

Query: 473 RVLNLSLSKFSK*NLISLSASFIKRDAGIFNKILDNVYVPDVVF--AGAPTLLHPIS 309
              N S S +S    I  +   ++R    +   L  VY+ + +   A APTLL PI+
Sbjct: 206 ---NASQSLYSTRQHILQTVKRLRRLVFPYMVPLTTVYLFEYLINQAVAPTLLFPIN 259

>sp|Q03557|GATH_YEAST Probable glutamyl-tRNA(Gln) amidotransferase subunit A,
           mitochondrial precursor (Glu-ADT subunit A)
          Length = 464

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
 Frame = -2

Query: 602 NACILMFSNSNLTFSKVELINIEEFDNDISYPILVSQT*KSPDRVLNLSLSKFSK*NLIS 423
           N C   F N+ +   K+ +  I+EFD    +P +++ +  +PD +  L +   SK  L  
Sbjct: 341 NLCSDAFKNNFIKAEKLRVNLIDEFDGIFRFPNVLTNSKGNPDGLDLLIVPTSSK--LPG 398

Query: 422 LSASFIKRDA-GIFNKILDNVYVPDVVFAGAPTLLHPI 312
               F + +A    N  +++V+   +  AG P+L  P+
Sbjct: 399 SIRDFEEEEAKSPANSYINDVFTVPMSLAGLPSLSMPL 436

>sp|P42359|YSC6_STRGC Hypothetical zinc metalloproteinase in scaA 5'region (ORF6)
          Length = 564

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = +1

Query: 184 IIGENATTYGNCTSFDRKLWLINGEIEIFFNWIRDPDPYEFGEIGWSSVGAPANTTSGTY 363
           I+ EN T + N     +KL LI    +I ++W +   P ++ E  W   G PA+  +  Y
Sbjct: 394 IVDENLTLFENA----QKLSLI----DIAYSWSKWNQPVDYKE--W---GMPAHMVNAYY 440

Query: 364 TLSKILLKIPASLL 405
              K L+  PA++L
Sbjct: 441 NPQKNLIVFPAAIL 454

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,130,856
Number of Sequences: 369166
Number of extensions: 1745672
Number of successful extensions: 4336
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4336
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00551

  1. Dr_sW_014_E09
  2. Dr_sW_027_E19