Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_E19
(895 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55281|CAD17_RAT Cadherin-17 precursor (Liver-intestine-... 33 1.1
sp|P36099|YKD0_YEAST Hypothetical 23.0 kDa protein in IXR1-... 32 1.8
sp|P47040|BTN1_YEAST BTN1 protein precursor 32 1.8
sp|Q03557|GATH_YEAST Probable glutamyl-tRNA(Gln) amidotrans... 31 4.1
sp|P42359|YSC6_STRGC Hypothetical zinc metalloproteinase in... 30 9.1
>sp|P55281|CAD17_RAT Cadherin-17 precursor (Liver-intestine-cadherin) (LI-cadherin)
Length = 827
Score = 33.1 bits (74), Expect = 1.1
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Frame = +2
Query: 122 KVIIVIRNDLYNITPEI--IIGENATTYGNCTSFD----RKLWLINGEIEIFFNWIRDPD 283
+V+ I+N YN+ + + G+N ++ + TS D +W +EI N + DP
Sbjct: 196 QVLDPIKNPYYNLVVSVKDMGGQNENSFSDTTSVDITVRENIWKAPEPVEIREN-LTDPH 254
Query: 284 PYEFGEIGWSSVGA 325
P + ++ W+ GA
Sbjct: 255 PIKITQVQWNDPGA 268
>sp|P36099|YKD0_YEAST Hypothetical 23.0 kDa protein in IXR1-TFA1 intergenic region
Length = 201
Score = 32.3 bits (72), Expect = 1.8
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Frame = -1
Query: 172 YFWCNIV*IISDYYYNFHFSNYTNTVLIFFIK-------YYIFERCSIFINRFIMICQR 17
+++C IV ++ YYY +++ Y + +IFF+K YIF SI+ F C+R
Sbjct: 12 FYYCIIVLLLYYYYYYYYYYYYGMSSIIFFLKIKKKIVQIYIFIYYSIWF--FFFKCRR 68
>sp|P47040|BTN1_YEAST BTN1 protein precursor
Length = 408
Score = 32.3 bits (72), Expect = 1.8
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Frame = -2
Query: 627 PVPVKSLTFTSLNACILMF-----SNSNLTFSKVELINIEEFDNDISYPILVSQT*KSPD 463
PV + L F+ L L + +++NLT+ ++ I+ E D + +P+ + T
Sbjct: 151 PVKLTLLVFSLLPFAFLFYFKLESNDTNLTYQSLQQIDEAEDDQLVPFPVAFTHT----- 205
Query: 462 RVLNLSLSKFSK*NLISLSASFIKRDAGIFNKILDNVYVPDVVF--AGAPTLLHPIS 298
N S S +S I + ++R + L VY+ + + A APTLL PI+
Sbjct: 206 ---NASQSLYSTRQHILQTVKRLRRLVFPYMVPLTTVYLFEYLINQAVAPTLLFPIN 259
>sp|Q03557|GATH_YEAST Probable glutamyl-tRNA(Gln) amidotransferase subunit A,
mitochondrial precursor (Glu-ADT subunit A)
Length = 464
Score = 31.2 bits (69), Expect = 4.1
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = -2
Query: 591 NACILMFSNSNLTFSKVELINIEEFDNDISYPILVSQT*KSPDRVLNLSLSKFSK*NLIS 412
N C F N+ + K+ + I+EFD +P +++ + +PD + L + SK L
Sbjct: 341 NLCSDAFKNNFIKAEKLRVNLIDEFDGIFRFPNVLTNSKGNPDGLDLLIVPTSSK--LPG 398
Query: 411 LSASFIKRDA-GIFNKILDNVYVPDVVFAGAPTLLHPI 301
F + +A N +++V+ + AG P+L P+
Sbjct: 399 SIRDFEEEEAKSPANSYINDVFTVPMSLAGLPSLSMPL 436
>sp|P42359|YSC6_STRGC Hypothetical zinc metalloproteinase in scaA 5'region (ORF6)
Length = 564
Score = 30.0 bits (66), Expect = 9.1
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +2
Query: 173 IIGENATTYGNCTSFDRKLWLINGEIEIFFNWIRDPDPYEFGEIGWSSVGAPANTTSGTY 352
I+ EN T + N +KL LI +I ++W + P ++ E W G PA+ + Y
Sbjct: 394 IVDENLTLFENA----QKLSLI----DIAYSWSKWNQPVDYKE--W---GMPAHMVNAYY 440
Query: 353 TLSKILLKIPASLL 394
K L+ PA++L
Sbjct: 441 NPQKNLIVFPAAIL 454
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,733,226
Number of Sequences: 369166
Number of extensions: 1711889
Number of successful extensions: 4303
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4303
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)