Planaria EST Database

DrC_00550

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00550
         (600 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JI48|PLAC8_MOUSE  Placenta-specific gene 8 protein (C15...    69   9e-12
sp|Q9NZF1|PLAC8_HUMAN  Placenta-specific gene 8 protein (C15...    63   6e-10
sp|Q9BYQ3|KRA93_HUMAN  Keratin-associated protein 9-3 (Kerat...    34   0.32 
sp|Q8K3I4|MYRIP_MOUSE  Rab effector MyRIP (Myosin-VIIa- and ...    34   0.32 
sp|Q701N2|KRA55_HUMAN  Keratin-associated protein 5-5 (Kerat...    33   0.42 
sp|Q9BYQ7|KR410_HUMAN  Keratin-associated protein 4-10 (Kera...    33   0.72 
sp|Q701N4|KRA52_HUMAN  Keratin-associated protein 5-2 (Kerat...    32   0.94 
sp|Q6L8G4|KR511_HUMAN  Keratin-associated protein 5-11 (Kera...    31   2.1  
sp|P60371|KR106_HUMAN  Keratin-associated protein 10-6 (Kera...    31   2.7  
sp|P60412|KR10B_HUMAN  Keratin-associated protein 10-11 (Ker...    31   2.7  

>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
          Length = 112

 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
 Frame = +2

Query: 122 TVIIQQPK-VSASGVREWSSGLLSCFDDVASCCCVCLCPTCYISRLYSRYDECCCTSCCV 298
           TVI+ QP  V A     W + L  CF D   C C   C TC   ++ +  +ECC     V
Sbjct: 6   TVIVTQPGFVRAPQNSNWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNECCLCGTTV 65

Query: 299 PLSVFTLRVQHRNRHKVYGSMLNDLCSTSVCYLCAVCQLKRDMD 430
                 +R  +R R+ + GS+ +D   T  C +C+VCQLKRD++
Sbjct: 66  -----AMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDIN 104

>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
          Length = 115

 Score = 62.8 bits (151), Expect = 6e-10
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
 Frame = +2

Query: 125 VIIQQPKVSASGVRE---WSSGLLSCFDDVASCCCVCLCPTCYISRLYSRYDECCCTSCC 295
           V++ QP V      +   W +G+  CF D   C C   C  C   ++ +  +ECC     
Sbjct: 8   VVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECCLCGTS 67

Query: 296 VPLSVFTLRVQHRNRHKVYGSMLNDLCSTSVCYLCAVCQLKRDMD 430
           V      +R  +R R+ + GS+ +D  +T  C  C +CQ+KRD++
Sbjct: 68  V-----AMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDIN 107

>sp|Q9BYQ3|KRA93_HUMAN Keratin-associated protein 9-3 (Keratin-associated protein 9.3)
           (Ultrahigh sulfur keratin-associated protein 9.3)
          Length = 159

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 203 VASCCCVCLCPTCYISRLYSRYDECCCTSCCVPLSV 310
           V+SCC  C  PTC         + CC T+CC P+ V
Sbjct: 39  VSSCCQPCCHPTCC-------QNTCCRTTCCQPICV 67

>sp|Q8K3I4|MYRIP_MOUSE Rab effector MyRIP (Myosin-VIIa- and Rab-interacting protein)
           (Exophilin-8) (Slp homolog lacking C2 domains-c)
          Length = 856

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
 Frame = +2

Query: 239 CYISRLYSRYDECCCTSCCVPLSVFTLRVQHRNRHKVYGSMLNDLCSTSVCY-------L 397
           C I   + ++ E CC  CC P   FT  V  R R    G     +C +   Y       +
Sbjct: 50  CSILSKHQKFVERCCMRCCSP---FTFLVNARRR---CGECKFSVCKSCCSYQKHEKLWV 103

Query: 398 CAVCQLKRDMDFVVRTKGTLAM*MIWSAFCALLFYENYS*KFLLMNSNNVLK 553
           C VCQ  R    ++RT+      + W       FY N   +F    S  VLK
Sbjct: 104 CCVCQQAR----LLRTQS-----LEW-------FYNNVKSRFKRFGSAKVLK 139

>sp|Q701N2|KRA55_HUMAN Keratin-associated protein 5-5 (Keratin-associated protein 5.5)
           (Ultrahigh sulfur keratin-associated protein 5.5)
           (Keratin-associated protein 5-11) (Keratin-associated
           protein 5.11)
          Length = 221

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +2

Query: 188 SCFDDVASCCCVCLCPTCYISRLYSRYDECCC-TSCCVPL 304
           SCF    S CC   C           Y  CCC +SCCVP+
Sbjct: 187 SCFSGCGSSCCQSSC-----------YKPCCCQSSCCVPV 215


 Score = 32.0 bits (71), Expect = 1.2
 Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
 Frame = +2

Query: 209 SCCCVCLCPT-----CYISRLYSRYDECCCTSCCVPLSVFTLRVQHRNRHKVYGSMLNDL 373
           SCC  C C +     C  S     Y  CC +SCC P S F              S     
Sbjct: 152 SCCKPCCCSSGCGSSCCQSSCCKPY--CCQSSCCKPCSCF--------------SGCGSS 195

Query: 374 CSTSVCYLCAVCQ 412
           C  S CY    CQ
Sbjct: 196 CCQSSCYKPCCCQ 208

>sp|Q9BYQ7|KR410_HUMAN Keratin-associated protein 4-10 (Keratin-associated protein 4.10)
           (Ultrahigh sulfur keratin-associated protein 4.10)
          Length = 127

 Score = 32.7 bits (73), Expect = 0.72
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +2

Query: 209 SCC-CVCLCPTCYIS---RLYSRYDECCCTSCCVP 301
           SCC   C CP+C +S   R       CC T+CC P
Sbjct: 28  SCCQTTCCCPSCVVSSCCRPSCSQTTCCQTTCCRP 62

>sp|Q701N4|KRA52_HUMAN Keratin-associated protein 5-2 (Keratin-associated protein 5.2)
           (Ultrahigh sulfur keratin-associated protein 5.2)
           (Keratin-associated protein 5-8) (Keratin-associated
           protein 5.8)
          Length = 177

 Score = 32.3 bits (72), Expect = 0.94
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
 Frame = +2

Query: 179 GLLSCFDDVASCCCVCLCPT-CYISRLYSRYDE-CCC-TSCCVPLSVFTLRVQHRNRHKV 349
           G  SC    +SCC  C C + C  S   S   + CCC +SCCVP+               
Sbjct: 107 GCGSCGCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCCQSSCCVPVC-------------C 153

Query: 350 YGSMLNDLCSTSVCYLCAVCQLK 418
             S     C  S C +   CQ K
Sbjct: 154 QSSCCKPCCCQSNCCVPVCCQCK 176


 Score = 29.3 bits (64), Expect = 7.9
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +2

Query: 155 SGVREWSSGLLSCFDDVASCCCVCLCPTCYISRLYSRYDECCCTSC 292
           SG     SG   C      C   C  P C    + S    C CTSC
Sbjct: 33  SGRGGCGSGCGGCSSSCGGCGSRCYVPVCCCKPVCSWVPACSCTSC 78

>sp|Q6L8G4|KR511_HUMAN Keratin-associated protein 5-11 (Keratin-associated protein 5.11)
           (Ultrahigh sulfur keratin-associated protein 5.11)
          Length = 156

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 206 ASCCCVCLCPTCYISRLYSRYDECCC-TSCCVPL 304
           +SCC  C C +       S +  CCC +SCCVP+
Sbjct: 119 SSCCKPCCCQSSCCQS--SCFKPCCCQSSCCVPV 150

>sp|P60371|KR106_HUMAN Keratin-associated protein 10-6 (Keratin-associated protein 10.6)
           (High sulfur keratin-associated protein 10.6)
           (Keratin-associated protein 18-6) (Keratin-associated
           protein 18.6)
          Length = 365

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 17/62 (27%), Positives = 19/62 (30%)
 Frame = +2

Query: 206 ASCCCVCLCPTCYISRLYSRYDECCCTSCCVPLSVFTLRVQHRNRHKVYGSMLNDLCSTS 385
           A C  VC  P C +         CC  S C P    +   QH     V        C  S
Sbjct: 227 ACCVPVCCVPVCCVPTCSEDSSSCCQQSSCQPACCTSSPCQHACCVPVCSGASTSCCQQS 286

Query: 386 VC 391
            C
Sbjct: 287 SC 288

>sp|P60412|KR10B_HUMAN Keratin-associated protein 10-11 (Keratin-associated protein 10.11)
           (High sulfur keratin-associated protein 10.11)
           (Keratin-associated protein 18-11) (Keratin-associated
           protein 18.11)
          Length = 298

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +2

Query: 215 CCVCLCPTCYISRLY--SRYDECCCTSCCVPLSVFTL 319
           CCV +C     SR    S    CC TSCC P S  +L
Sbjct: 203 CCVPVCSRASYSRCQQPSCQPACCTTSCCRPSSSVSL 239

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,580,193
Number of Sequences: 369166
Number of extensions: 1295281
Number of successful extensions: 4086
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3941
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4602033670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00550

  1. Dr_sW_014_E07
  2. Dr_sW_006_N09