Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_E07
(594 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 69 9e-12
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 63 6e-10
sp|Q9BYQ3|KRA93_HUMAN Keratin-associated protein 9-3 (Kerat... 34 0.32
sp|Q8K3I4|MYRIP_MOUSE Rab effector MyRIP (Myosin-VIIa- and ... 34 0.32
sp|Q701N2|KRA55_HUMAN Keratin-associated protein 5-5 (Kerat... 33 0.41
sp|Q9BYQ7|KR410_HUMAN Keratin-associated protein 4-10 (Kera... 33 0.70
sp|Q701N4|KRA52_HUMAN Keratin-associated protein 5-2 (Kerat... 32 0.92
sp|Q6L8G4|KR511_HUMAN Keratin-associated protein 5-11 (Kera... 31 2.0
sp|P60371|KR106_HUMAN Keratin-associated protein 10-6 (Kera... 31 2.7
sp|P60412|KR10B_HUMAN Keratin-associated protein 10-11 (Ker... 31 2.7
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 68.9 bits (167), Expect = 9e-12
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = +2
Query: 122 TVIIQQPK-VSASGVREWSSGLLSCFDDVASCCCVCLCPTCYISRLYSRYDECCCTSCCV 298
TVI+ QP V A W + L CF D C C C TC ++ + +ECC V
Sbjct: 6 TVIVTQPGFVRAPQNSNWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNECCLCGTTV 65
Query: 299 PLSVFTLRVQHRNRHKVYGSMLNDLCSTSVCYLCAVCQLKRDMD 430
+R +R R+ + GS+ +D T C +C+VCQLKRD++
Sbjct: 66 -----AMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDIN 104
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 62.8 bits (151), Expect = 6e-10
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Frame = +2
Query: 125 VIIQQPKVSASGVRE---WSSGLLSCFDDVASCCCVCLCPTCYISRLYSRYDECCCTSCC 295
V++ QP V + W +G+ CF D C C C C ++ + +ECC
Sbjct: 8 VVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECCLCGTS 67
Query: 296 VPLSVFTLRVQHRNRHKVYGSMLNDLCSTSVCYLCAVCQLKRDMD 430
V +R +R R+ + GS+ +D +T C C +CQ+KRD++
Sbjct: 68 V-----AMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDIN 107
>sp|Q9BYQ3|KRA93_HUMAN Keratin-associated protein 9-3 (Keratin-associated protein 9.3)
(Ultrahigh sulfur keratin-associated protein 9.3)
Length = 159
Score = 33.9 bits (76), Expect = 0.32
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 203 VASCCCVCLCPTCYISRLYSRYDECCCTSCCVPLSV 310
V+SCC C PTC + CC T+CC P+ V
Sbjct: 39 VSSCCQPCCHPTCC-------QNTCCRTTCCQPICV 67
>sp|Q8K3I4|MYRIP_MOUSE Rab effector MyRIP (Myosin-VIIa- and Rab-interacting protein)
(Exophilin-8) (Slp homolog lacking C2 domains-c)
Length = 856
Score = 33.9 bits (76), Expect = 0.32
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Frame = +2
Query: 239 CYISRLYSRYDECCCTSCCVPLSVFTLRVQHRNRHKVYGSMLNDLCSTSVCY-------L 397
C I + ++ E CC CC P FT V R R G +C + Y +
Sbjct: 50 CSILSKHQKFVERCCMRCCSP---FTFLVNARRR---CGECKFSVCKSCCSYQKHEKLWV 103
Query: 398 CAVCQLKRDMDFVVRTKGTLAM*MIWSAFCALLFYENYS*KFLLMNSNNVLK 553
C VCQ R ++RT+ + W FY N +F S VLK
Sbjct: 104 CCVCQQAR----LLRTQS-----LEW-------FYNNVKSRFKRFGSAKVLK 139
>sp|Q701N2|KRA55_HUMAN Keratin-associated protein 5-5 (Keratin-associated protein 5.5)
(Ultrahigh sulfur keratin-associated protein 5.5)
(Keratin-associated protein 5-11) (Keratin-associated
protein 5.11)
Length = 221
Score = 33.5 bits (75), Expect = 0.41
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 188 SCFDDVASCCCVCLCPTCYISRLYSRYDECCC-TSCCVPL 304
SCF S CC C Y CCC +SCCVP+
Sbjct: 187 SCFSGCGSSCCQSSC-----------YKPCCCQSSCCVPV 215
Score = 32.0 bits (71), Expect = 1.2
Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Frame = +2
Query: 209 SCCCVCLCPT-----CYISRLYSRYDECCCTSCCVPLSVFTLRVQHRNRHKVYGSMLNDL 373
SCC C C + C S Y CC +SCC P S F S
Sbjct: 152 SCCKPCCCSSGCGSSCCQSSCCKPY--CCQSSCCKPCSCF--------------SGCGSS 195
Query: 374 CSTSVCYLCAVCQ 412
C S CY CQ
Sbjct: 196 CCQSSCYKPCCCQ 208
>sp|Q9BYQ7|KR410_HUMAN Keratin-associated protein 4-10 (Keratin-associated protein 4.10)
(Ultrahigh sulfur keratin-associated protein 4.10)
Length = 127
Score = 32.7 bits (73), Expect = 0.70
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +2
Query: 209 SCC-CVCLCPTCYIS---RLYSRYDECCCTSCCVP 301
SCC C CP+C +S R CC T+CC P
Sbjct: 28 SCCQTTCCCPSCVVSSCCRPSCSQTTCCQTTCCRP 62
>sp|Q701N4|KRA52_HUMAN Keratin-associated protein 5-2 (Keratin-associated protein 5.2)
(Ultrahigh sulfur keratin-associated protein 5.2)
(Keratin-associated protein 5-8) (Keratin-associated
protein 5.8)
Length = 177
Score = 32.3 bits (72), Expect = 0.92
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Frame = +2
Query: 179 GLLSCFDDVASCCCVCLCPT-CYISRLYSRYDE-CCC-TSCCVPLSVFTLRVQHRNRHKV 349
G SC +SCC C C + C S S + CCC +SCCVP+
Sbjct: 107 GCGSCGCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCCQSSCCVPVC-------------C 153
Query: 350 YGSMLNDLCSTSVCYLCAVCQLK 418
S C S C + CQ K
Sbjct: 154 QSSCCKPCCCQSNCCVPVCCQCK 176
Score = 29.3 bits (64), Expect = 7.8
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +2
Query: 155 SGVREWSSGLLSCFDDVASCCCVCLCPTCYISRLYSRYDECCCTSC 292
SG SG C C C P C + S C CTSC
Sbjct: 33 SGRGGCGSGCGGCSSSCGGCGSRCYVPVCCCKPVCSWVPACSCTSC 78
>sp|Q6L8G4|KR511_HUMAN Keratin-associated protein 5-11 (Keratin-associated protein 5.11)
(Ultrahigh sulfur keratin-associated protein 5.11)
Length = 156
Score = 31.2 bits (69), Expect = 2.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 206 ASCCCVCLCPTCYISRLYSRYDECCC-TSCCVPL 304
+SCC C C + S + CCC +SCCVP+
Sbjct: 119 SSCCKPCCCQSSCCQS--SCFKPCCCQSSCCVPV 150
>sp|P60371|KR106_HUMAN Keratin-associated protein 10-6 (Keratin-associated protein 10.6)
(High sulfur keratin-associated protein 10.6)
(Keratin-associated protein 18-6) (Keratin-associated
protein 18.6)
Length = 365
Score = 30.8 bits (68), Expect = 2.7
Identities = 17/62 (27%), Positives = 19/62 (30%)
Frame = +2
Query: 206 ASCCCVCLCPTCYISRLYSRYDECCCTSCCVPLSVFTLRVQHRNRHKVYGSMLNDLCSTS 385
A C VC P C + CC S C P + QH V C S
Sbjct: 227 ACCVPVCCVPVCCVPTCSEDSSSCCQQSSCQPACCTSSPCQHACCVPVCSGASTSCCQQS 286
Query: 386 VC 391
C
Sbjct: 287 SC 288
>sp|P60412|KR10B_HUMAN Keratin-associated protein 10-11 (Keratin-associated protein 10.11)
(High sulfur keratin-associated protein 10.11)
(Keratin-associated protein 18-11) (Keratin-associated
protein 18.11)
Length = 298
Score = 30.8 bits (68), Expect = 2.7
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 215 CCVCLCPTCYISRLY--SRYDECCCTSCCVPLSVFTL 319
CCV +C SR S CC TSCC P S +L
Sbjct: 203 CCVPVCSRASYSRCQQPSCQPACCTTSCCRPSSSVSL 239
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,897,908
Number of Sequences: 369166
Number of extensions: 1282095
Number of successful extensions: 4079
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3934
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)