Planarian EST Database

DrC_00547

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00547 CTTATCGAAATCTATATAAATCTTATATGATGAATTGCTTTTTAATTCGCCGGAATTTGT TTTCTATCAATAATATATATAAATCTGTAAATAAATTGTCATCTATCTCGCCTGTTTCTA GTAATCTTATTCACACCAGTGCTCGTACATGTGATATTGATCAGGCAGCAAAATATATTG GAGCTGGAGCAGCAACTGCTGGTGTTGCAGGTTCAGGAGCTGGTATTGGAACAGTTTTTG GAAGTTTAGTTATTGGGTACGCAAGAAATCCCGGGCTGAAACAGCAACTTTTCTCTTACG CAATATTAGGATTTGCTCTCAGTGAGGCTATGGGATTATTTTGTTTGATGATGGCATTTT TAATTCTCTATGCTTTCTGAAGAATATTAGTCATATTTGATATTAGTTTTTAAATTTTAG AATTGTATTTGTCAATTGTTACTAGCTCAAATACACTAAATAAAAACTAATAATGGATA

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00547
         (479 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06055|AT5G2_HUMAN  ATP synthase lipid-binding protein, m...    92   8e-19
sp|Q5RAP9|AT5G2_PONPY  ATP synthase lipid-binding protein, m...    91   1e-18
sp|Q9U505|ATP9_MANSE  ATP synthase lipid-binding protein, mi...    91   1e-18
sp|Q06646|AT5G2_RAT  ATP synthase lipid-binding protein, mit...    91   2e-18
sp|P56383|AT5G2_MOUSE  ATP synthase lipid-binding protein, m...    89   4e-18
sp|Q06056|AT5G2_SHEEP  ATP synthase lipid-binding protein, m...    89   5e-18
sp|P07926|AT5G2_BOVIN  ATP synthase lipid-binding protein, m...    89   5e-18
sp|Q71S46|AT5G3_RAT  ATP synthase lipid-binding protein, mit...    89   7e-18
sp|Q5RFL2|AT5G3_PONPY  ATP synthase lipid-binding protein, m...    89   7e-18
sp|P56384|AT5G3_MOUSE  ATP synthase lipid-binding protein, m...    88   1e-17

>sp|Q06055|AT5G2_HUMAN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
           synthase proteolipid P2) (ATPase protein 9) (ATPase
           subunit C)
          Length = 141

 Score = 91.7 bits (226), Expect = 8e-19
 Identities = 52/89 (58%), Positives = 56/89 (62%)
 Frame = +3

Query: 108 SPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQ 287
           S VSS    TSA + DID                         FGSL+IGYARNP LKQQ
Sbjct: 52  SLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQ 111

Query: 288 LFSYAILGFALSEAMGLFCLMMAFLILYA 374
           LFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 112 LFSYAILGFALSEAMGLFCLMVAFLILFA 140

>sp|Q5RAP9|AT5G2_PONPY ATP synthase lipid-binding protein, mitochondrial precursor (ATP
           synthase proteolipid P2) (ATPase protein 9) (ATPase
           subunit C)
          Length = 141

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 52/89 (58%), Positives = 56/89 (62%)
 Frame = +3

Query: 108 SPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQ 287
           S VSS    TSA + DID                         FGSL+IGYARNP LKQQ
Sbjct: 52  SLVSSRNFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQ 111

Query: 288 LFSYAILGFALSEAMGLFCLMMAFLILYA 374
           LFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 112 LFSYAILGFALSEAMGLFCLMVAFLILFA 140

>sp|Q9U505|ATP9_MANSE ATP synthase lipid-binding protein, mitochondrial precursor (ATPase
           protein 9) (ATPase subunit C)
          Length = 131

 Score = 90.9 bits (224), Expect = 1e-18
 Identities = 43/47 (91%), Positives = 46/47 (97%)
 Frame = +3

Query: 237 FGSLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYAF 377
           FGSL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLMMAFL+L+AF
Sbjct: 85  FGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF 131

>sp|Q06646|AT5G2_RAT ATP synthase lipid-binding protein, mitochondrial precursor (ATP
           synthase proteolipid P2) (ATPase protein 9) (ATPase
           subunit C)
          Length = 141

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 54/115 (46%), Positives = 63/115 (54%)
 Frame = +3

Query: 30  MNCFLIRRNLFSINNIYKSVNKLSSISPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXX 209
           ++C  +RR L S+               + S    TSA + DID                
Sbjct: 41  LSCLAVRRPLTSL---------------IPSRSFQTSAISRDIDTAAKFIGAGAATVGVA 85

Query: 210 XXXXXXXXXFGSLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 374
                    FGSL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 86  GSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 140

>sp|P56383|AT5G2_MOUSE ATP synthase lipid-binding protein, mitochondrial precursor (ATP
           synthase proteolipid P2) (ATPase protein 9) (ATPase
           subunit C)
          Length = 146

 Score = 89.4 bits (220), Expect = 4e-18
 Identities = 50/89 (56%), Positives = 55/89 (61%)
 Frame = +3

Query: 108 SPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQ 287
           S + S    TSA + DID                         FGSL+IGYARNP LKQQ
Sbjct: 57  SLIPSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQ 116

Query: 288 LFSYAILGFALSEAMGLFCLMMAFLILYA 374
           LFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 117 LFSYAILGFALSEAMGLFCLMVAFLILFA 145

>sp|Q06056|AT5G2_SHEEP ATP synthase lipid-binding protein, mitochondrial precursor (ATP
           synthase proteolipid P2) (ATPase protein 9) (ATPase
           subunit C)
          Length = 143

 Score = 89.0 bits (219), Expect = 5e-18
 Identities = 51/92 (55%), Positives = 58/92 (63%)
 Frame = +3

Query: 99  SSISPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGL 278
           +S++P  S    TSA + DID                         FGSL+IGYARNP L
Sbjct: 53  TSLTP--SRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSL 110

Query: 279 KQQLFSYAILGFALSEAMGLFCLMMAFLILYA 374
           KQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 111 KQQLFSYAILGFALSEAMGLFCLMVAFLILFA 142

>sp|P07926|AT5G2_BOVIN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
           synthase proteolipid P2) (ATPase protein 9) (ATPase
           subunit C)
          Length = 143

 Score = 89.0 bits (219), Expect = 5e-18
 Identities = 51/92 (55%), Positives = 58/92 (63%)
 Frame = +3

Query: 99  SSISPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGL 278
           +S++P  S    TSA + DID                         FGSL+IGYARNP L
Sbjct: 53  TSLTP--SRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSL 110

Query: 279 KQQLFSYAILGFALSEAMGLFCLMMAFLILYA 374
           KQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 111 KQQLFSYAILGFALSEAMGLFCLMVAFLILFA 142

>sp|Q71S46|AT5G3_RAT ATP synthase lipid-binding protein, mitochondrial precursor (ATP
           synthase proteolipid P3) (ATPase protein 9) (ATPase
           subunit C)
 sp|P48201|AT5G3_HUMAN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
           synthase proteolipid P3) (ATPase protein 9) (ATPase
           subunit C)
          Length = 142

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 49/92 (53%), Positives = 56/92 (60%)
 Frame = +3

Query: 99  SSISPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGL 278
           + +S +      TSA + DID                         FGSL+IGYARNP L
Sbjct: 50  NGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSL 109

Query: 279 KQQLFSYAILGFALSEAMGLFCLMMAFLILYA 374
           KQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 110 KQQLFSYAILGFALSEAMGLFCLMVAFLILFA 141

>sp|Q5RFL2|AT5G3_PONPY ATP synthase lipid-binding protein, mitochondrial precursor (ATP
           synthase proteolipid P3) (ATPase protein 9) (ATPase
           subunit C)
          Length = 142

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 49/92 (53%), Positives = 56/92 (60%)
 Frame = +3

Query: 99  SSISPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGL 278
           + +S +      TSA + DID                         FGSL+IGYARNP L
Sbjct: 50  NGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSL 109

Query: 279 KQQLFSYAILGFALSEAMGLFCLMMAFLILYA 374
           KQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 110 KQQLFSYAILGFALSEAMGLFCLMVAFLILFA 141

>sp|P56384|AT5G3_MOUSE ATP synthase lipid-binding protein, mitochondrial precursor (ATP
           synthase proteolipid P3) (ATPase protein 9) (ATPase
           subunit C)
          Length = 141

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 42/46 (91%), Positives = 45/46 (97%)
 Frame = +3

Query: 237 FGSLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 374
           FGSL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 95  FGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 140

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,818,123
Number of Sequences: 369166
Number of extensions: 613608
Number of successful extensions: 2387
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2387
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00547

Planaria EST Database

DrC_00547

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail