Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_D17
(477 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q06055|AT5G2_HUMAN ATP synthase lipid-binding protein, m... 92 8e-19
sp|Q5RAP9|AT5G2_PONPY ATP synthase lipid-binding protein, m... 91 1e-18
sp|Q9U505|ATP9_MANSE ATP synthase lipid-binding protein, mi... 91 1e-18
sp|Q06646|AT5G2_RAT ATP synthase lipid-binding protein, mit... 91 2e-18
sp|P56383|AT5G2_MOUSE ATP synthase lipid-binding protein, m... 89 4e-18
sp|Q06056|AT5G2_SHEEP ATP synthase lipid-binding protein, m... 89 5e-18
sp|P07926|AT5G2_BOVIN ATP synthase lipid-binding protein, m... 89 5e-18
sp|Q71S46|AT5G3_RAT ATP synthase lipid-binding protein, mit... 89 7e-18
sp|Q5RFL2|AT5G3_PONPY ATP synthase lipid-binding protein, m... 89 7e-18
sp|P56384|AT5G3_MOUSE ATP synthase lipid-binding protein, m... 88 1e-17
>sp|Q06055|AT5G2_HUMAN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 91.7 bits (226), Expect = 8e-19
Identities = 52/89 (58%), Positives = 56/89 (62%)
Frame = +1
Query: 106 SPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQ 285
S VSS TSA + DID FGSL+IGYARNP LKQQ
Sbjct: 52 SLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQ 111
Query: 286 LFSYAILGFALSEAMGLFCLMMAFLILYA 372
LFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 112 LFSYAILGFALSEAMGLFCLMVAFLILFA 140
>sp|Q5RAP9|AT5G2_PONPY ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 91.3 bits (225), Expect = 1e-18
Identities = 52/89 (58%), Positives = 56/89 (62%)
Frame = +1
Query: 106 SPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQ 285
S VSS TSA + DID FGSL+IGYARNP LKQQ
Sbjct: 52 SLVSSRNFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQ 111
Query: 286 LFSYAILGFALSEAMGLFCLMMAFLILYA 372
LFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 112 LFSYAILGFALSEAMGLFCLMVAFLILFA 140
>sp|Q9U505|ATP9_MANSE ATP synthase lipid-binding protein, mitochondrial precursor (ATPase
protein 9) (ATPase subunit C)
Length = 131
Score = 90.9 bits (224), Expect = 1e-18
Identities = 43/47 (91%), Positives = 46/47 (97%)
Frame = +1
Query: 235 FGSLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYAF 375
FGSL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLMMAFL+L+AF
Sbjct: 85 FGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF 131
>sp|Q06646|AT5G2_RAT ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 90.5 bits (223), Expect = 2e-18
Identities = 54/115 (46%), Positives = 63/115 (54%)
Frame = +1
Query: 28 MNCFLIRRNLFSINNIYKSVNKLSSISPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXX 207
++C +RR L S+ + S TSA + DID
Sbjct: 41 LSCLAVRRPLTSL---------------IPSRSFQTSAISRDIDTAAKFIGAGAATVGVA 85
Query: 208 XXXXXXXXXFGSLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 372
FGSL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 86 GSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 140
>sp|P56383|AT5G2_MOUSE ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 146
Score = 89.4 bits (220), Expect = 4e-18
Identities = 50/89 (56%), Positives = 55/89 (61%)
Frame = +1
Query: 106 SPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGLKQQ 285
S + S TSA + DID FGSL+IGYARNP LKQQ
Sbjct: 57 SLIPSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQ 116
Query: 286 LFSYAILGFALSEAMGLFCLMMAFLILYA 372
LFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 117 LFSYAILGFALSEAMGLFCLMVAFLILFA 145
>sp|Q06056|AT5G2_SHEEP ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 143
Score = 89.0 bits (219), Expect = 5e-18
Identities = 51/92 (55%), Positives = 58/92 (63%)
Frame = +1
Query: 97 SSISPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGL 276
+S++P S TSA + DID FGSL+IGYARNP L
Sbjct: 53 TSLTP--SRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSL 110
Query: 277 KQQLFSYAILGFALSEAMGLFCLMMAFLILYA 372
KQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 111 KQQLFSYAILGFALSEAMGLFCLMVAFLILFA 142
>sp|P07926|AT5G2_BOVIN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P2) (ATPase protein 9) (ATPase
subunit C)
Length = 143
Score = 89.0 bits (219), Expect = 5e-18
Identities = 51/92 (55%), Positives = 58/92 (63%)
Frame = +1
Query: 97 SSISPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGL 276
+S++P S TSA + DID FGSL+IGYARNP L
Sbjct: 53 TSLTP--SRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSL 110
Query: 277 KQQLFSYAILGFALSEAMGLFCLMMAFLILYA 372
KQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 111 KQQLFSYAILGFALSEAMGLFCLMVAFLILFA 142
>sp|Q71S46|AT5G3_RAT ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
sp|P48201|AT5G3_HUMAN ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
Length = 142
Score = 88.6 bits (218), Expect = 7e-18
Identities = 49/92 (53%), Positives = 56/92 (60%)
Frame = +1
Query: 97 SSISPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGL 276
+ +S + TSA + DID FGSL+IGYARNP L
Sbjct: 50 NGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSL 109
Query: 277 KQQLFSYAILGFALSEAMGLFCLMMAFLILYA 372
KQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 110 KQQLFSYAILGFALSEAMGLFCLMVAFLILFA 141
>sp|Q5RFL2|AT5G3_PONPY ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
Length = 142
Score = 88.6 bits (218), Expect = 7e-18
Identities = 49/92 (53%), Positives = 56/92 (60%)
Frame = +1
Query: 97 SSISPVSSNLIHTSARTCDIDQXXXXXXXXXXXXXXXXXXXXXXXXFGSLVIGYARNPGL 276
+ +S + TSA + DID FGSL+IGYARNP L
Sbjct: 50 NGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSL 109
Query: 277 KQQLFSYAILGFALSEAMGLFCLMMAFLILYA 372
KQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 110 KQQLFSYAILGFALSEAMGLFCLMVAFLILFA 141
>sp|P56384|AT5G3_MOUSE ATP synthase lipid-binding protein, mitochondrial precursor (ATP
synthase proteolipid P3) (ATPase protein 9) (ATPase
subunit C)
Length = 141
Score = 87.8 bits (216), Expect = 1e-17
Identities = 42/46 (91%), Positives = 45/46 (97%)
Frame = +1
Query: 235 FGSLVIGYARNPGLKQQLFSYAILGFALSEAMGLFCLMMAFLILYA 372
FGSL+IGYARNP LKQQLFSYAILGFALSEAMGLFCLM+AFLIL+A
Sbjct: 95 FGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 140
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,706,026
Number of Sequences: 369166
Number of extensions: 612081
Number of successful extensions: 2379
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2379
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)