Planaria EST Database

DrC_00538

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00538
         (684 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P72794|CYSH_SYNY3  Phosphoadenosine phosphosulfate reduct...    31   2.7  
sp|Q8A7D1|TILS_BACTN  tRNA(Ile)-lysidine synthase (tRNA(Ile)...    30   5.9  
sp|Q9UZW0|PGK_PYRAB  Phosphoglycerate kinase                       30   7.7  

>sp|P72794|CYSH_SYNY3 Phosphoadenosine phosphosulfate reductase (PAPS reductase,
           thioredoxin dependent) (PAdoPS reductase)
           (3'-phosphoadenylylsulfate reductase) (PAPS
           sulfotransferase)
          Length = 249

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 134 NKYRLIIILDQSKPILHNHLTQAGFKIVPFYCKGDKKYGYYLSDRRIILSDYIESD 301
           N+Y+++ ILD +  +++ +LT       PF+ +G    G + S R ++  D  E D
Sbjct: 165 NQYKVLPILDWNSKMVYEYLTAHDLPYHPFFDQGYVSVGDWHSSRPLMAHDEDERD 220

>sp|Q8A7D1|TILS_BACTN tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 426

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 161 DQSKPILHNHLTQAGFKIVPFYCKGDKKYGYYLSDRRIILS 283
           D+    +H    QAG   +PF   G KK   YL+DR+  +S
Sbjct: 345 DKLNEEIHCRKWQAGDTFIPFGMTGKKKISDYLTDRKFSIS 385

>sp|Q9UZW0|PGK_PYRAB Phosphoglycerate kinase
          Length = 410

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
 Frame = +2

Query: 35  FTDADLTNGDCQGICIMSYPEAVNFGNIWPQFTNKYRLIIILDQSKPILHNHL----TQA 202
           F D  LT G    +  ++    +   NI  +F  K  L+ ++  ++ IL        T  
Sbjct: 216 FADVILTGGLVANVFTLAKGFDLGRKNI--EFMKKKGLLELVKHAEKILDEFYPYVRTPV 273

Query: 203 GFKIVPFYCKGDKKYGYYLSDRRIILSDYIESDAGEVTTQGAND 334
            F I     KGD++  Y LS++R +L+DY   D G  T +   D
Sbjct: 274 DFAID---YKGDREEIYLLSEKRELLNDYQIMDIGSRTIEKYRD 314

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,760,606
Number of Sequences: 369166
Number of extensions: 1593551
Number of successful extensions: 3203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3201
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5830600200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00538

  1. Dr_sW_013_O16
  2. Dr_sW_016_O12