Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_O16
(684 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P72794|CYSH_SYNY3 Phosphoadenosine phosphosulfate reduct... 31 2.7
sp|Q8A7D1|TILS_BACTN tRNA(Ile)-lysidine synthase (tRNA(Ile)... 30 5.9
sp|Q9UZW0|PGK_PYRAB Phosphoglycerate kinase 30 7.7
>sp|P72794|CYSH_SYNY3 Phosphoadenosine phosphosulfate reductase (PAPS reductase,
thioredoxin dependent) (PAdoPS reductase)
(3'-phosphoadenylylsulfate reductase) (PAPS
sulfotransferase)
Length = 249
Score = 31.2 bits (69), Expect = 2.7
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 134 NKYRLIIILDQSKPILHNHLTQAGFKIVPFYCKGDKKYGYYLSDRRIILSDYIESD 301
N+Y+++ ILD + +++ +LT PF+ +G G + S R ++ D E D
Sbjct: 165 NQYKVLPILDWNSKMVYEYLTAHDLPYHPFFDQGYVSVGDWHSSRPLMAHDEDERD 220
>sp|Q8A7D1|TILS_BACTN tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
Length = 426
Score = 30.0 bits (66), Expect = 5.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 161 DQSKPILHNHLTQAGFKIVPFYCKGDKKYGYYLSDRRIILS 283
D+ +H QAG +PF G KK YL+DR+ +S
Sbjct: 345 DKLNEEIHCRKWQAGDTFIPFGMTGKKKISDYLTDRKFSIS 385
>sp|Q9UZW0|PGK_PYRAB Phosphoglycerate kinase
Length = 410
Score = 29.6 bits (65), Expect = 7.7
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = +2
Query: 35 FTDADLTNGDCQGICIMSYPEAVNFGNIWPQFTNKYRLIIILDQSKPILHNHL----TQA 202
F D LT G + ++ + NI +F K L+ ++ ++ IL T
Sbjct: 216 FADVILTGGLVANVFTLAKGFDLGRKNI--EFMKKKGLLELVKHAEKILDEFYPYVRTPV 273
Query: 203 GFKIVPFYCKGDKKYGYYLSDRRIILSDYIESDAGEVTTQGAND 334
F I KGD++ Y LS++R +L+DY D G T + D
Sbjct: 274 DFAID---YKGDREEIYLLSEKRELLNDYQIMDIGSRTIEKYRD 314
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,760,606
Number of Sequences: 369166
Number of extensions: 1593551
Number of successful extensions: 3203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3201
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5830600200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)