Planaria EST Database

DrC_00530

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00530
         (561 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41824|YBOXH_APLCA  Y-box factor homolog (APY1)                 82   7e-16
sp|P21573|YBOX1_XENLA  Nuclease sensitive element binding pr...    80   3e-15
sp|P62960|YBOX1_MOUSE  Nuclease sensitive element binding pr...    80   3e-15
sp|P67809|YBOX1_HUMAN  Nuclease sensitive element binding pr...    80   3e-15
sp|Q06066|YBOX1_CHICK  Nuclease sensitive element binding pr...    80   3e-15
sp|Q9JKB3|DBPA_MOUSE  DNA-binding protein A (Cold shock doma...    80   4e-15
sp|P16989|DBPA_HUMAN  DNA-binding protein A (Cold shock doma...    80   4e-15
sp|Q62764|DBPA_RAT  DNA-binding protein A (Cold shock domain...    80   4e-15
sp|P45441|YBX2B_XENLA  Y-box binding protein 2-B (Cytoplasmi...    79   6e-15
sp|Q9Y2T7|YBOX2_HUMAN  Y-box binding protein 2 (Germ cell-sp...    79   8e-15

>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
          Length = 253

 Score = 82.4 bits (202), Expect = 7e-16
 Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
 Frame = +2

Query: 23  TQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEEVLFDIV 190
           +QV G VKWF+ K+GYGFI+ DD    +D+FVH  +I   N      S+ DGE+V FD+V
Sbjct: 31  SQVSGTVKWFNVKSGYGFINRDD--TKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVV 88

Query: 191 EGAKGLEARNVTGPNGGDVIGGK 259
           EG KG EA NVTGP G +V G K
Sbjct: 89  EGEKGNEAANVTGPEGSNVQGSK 111

>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 303

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
 Frame = +2

Query: 23  TQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEEVLFDIV 190
           T+V+G VKWF+ +NGYGFI+ +D    +D+FVH  +I   N      S+ DGE V FD+V
Sbjct: 35  TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 92

Query: 191 EGAKGLEARNVTGPNGGDVIGGK 259
           EG KG EA NVTGP G  V G K
Sbjct: 93  EGEKGAEAANVTGPEGVPVQGSK 115

>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 322

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
 Frame = +2

Query: 23  TQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEEVLFDIV 190
           T+V+G VKWF+ +NGYGFI+ +D    +D+FVH  +I   N      S+ DGE V FD+V
Sbjct: 55  TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 112

Query: 191 EGAKGLEARNVTGPNGGDVIGGK 259
           EG KG EA NVTGP G  V G K
Sbjct: 113 EGEKGAEAANVTGPGGVPVQGSK 135

>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 324

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
 Frame = +2

Query: 23  TQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEEVLFDIV 190
           T+V+G VKWF+ +NGYGFI+ +D    +D+FVH  +I   N      S+ DGE V FD+V
Sbjct: 57  TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 114

Query: 191 EGAKGLEARNVTGPNGGDVIGGK 259
           EG KG EA NVTGP G  V G K
Sbjct: 115 EGEKGAEAANVTGPGGVPVQGSK 137

>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 321

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
 Frame = +2

Query: 23  TQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEEVLFDIV 190
           T+V+G VKWF+ +NGYGFI+ +D    +D+FVH  +I   N      S+ DGE V FD+V
Sbjct: 54  TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 111

Query: 191 EGAKGLEARNVTGPNGGDVIGGK 259
           EG KG EA NVTGP G  V G K
Sbjct: 112 EGEKGAEAANVTGPGGVPVQGSK 134

>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
           3)
 sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
          Length = 361

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
 Frame = +2

Query: 23  TQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEEVLFDIV 190
           T+V+G VKWF+ +NGYGFI+ +D    +D+FVH  +I   N      S+ DGE V FD+V
Sbjct: 81  TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 138

Query: 191 EGAKGLEARNVTGPNGGDVIGGK 259
           EG KG EA NVTGP+G  V G +
Sbjct: 139 EGEKGAEAANVTGPDGVPVEGSR 161

>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
           DNA binding protein NF-GMB)
          Length = 372

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
 Frame = +2

Query: 23  TQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEEVLFDIV 190
           T+V+G VKWF+ +NGYGFI+ +D    +D+FVH  +I   N      S+ DGE V FD+V
Sbjct: 89  TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 146

Query: 191 EGAKGLEARNVTGPNGGDVIGGK 259
           EG KG EA NVTGP+G  V G +
Sbjct: 147 EGEKGAEAANVTGPDGVPVEGSR 169

>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
           protein YB2) (Y-box binding protein-A) (RYB-A)
          Length = 361

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
 Frame = +2

Query: 23  TQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEEVLFDIV 190
           T+V+G VKWF+ +NGYGFI+ +D    +D+FVH  +I   N      S+ DGE V FD+V
Sbjct: 81  TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 138

Query: 191 EGAKGLEARNVTGPNGGDVIGGK 259
           EG KG EA NVTGP+G  V G +
Sbjct: 139 EGEKGAEAANVTGPDGVPVEGSR 161

>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
           (mRNP3)
          Length = 324

 Score = 79.3 bits (194), Expect = 6e-15
 Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
 Frame = +2

Query: 23  TQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEEVLFDIV 190
           TQV G VKWF+ +NGYGFI+ +D  + +D+FVH  +I   N      S+ DGE V FD+V
Sbjct: 40  TQVQGTVKWFNVRNGYGFINRND--SKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVV 97

Query: 191 EGAKGLEARNVTGPNGGDVIGGK 259
           EG KG EA NVTGP G  V G +
Sbjct: 98  EGEKGAEAANVTGPGGVPVKGSR 120

>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
           (Contrin) (MSY2 homolog)
          Length = 364

 Score = 79.0 bits (193), Expect = 8e-15
 Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
 Frame = +2

Query: 26  QVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEEVLFDIVE 193
           QV+G VKWF+ +NGYGFI+ +D    +D+FVH  +I   N      S+ DGE V FD+VE
Sbjct: 93  QVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVE 150

Query: 194 GAKGLEARNVTGPNGGDVIGGK 259
           G KG EA NVTGP G  V G +
Sbjct: 151 GEKGAEATNVTGPGGVPVKGSR 172

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,272,556
Number of Sequences: 369166
Number of extensions: 630871
Number of successful extensions: 2038
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1965
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00530

  1. Dr_sW_013_N02
  2. Dr_sW_024_G14
  3. Dr_sW_007_O18
  4. Dr_sW_013_K20
  5. Dr_sW_023_A10
  6. Dr_sW_012_O03