Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_O03
(445 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 50 3e-06
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 47 1e-05
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 47 1e-05
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 47 1e-05
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 47 1e-05
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 47 2e-05
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 47 2e-05
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 47 2e-05
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 46 3e-05
sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-sp... 46 3e-05
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 49.7 bits (117), Expect = 3e-06
Identities = 27/52 (51%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +3
Query: 3 VHFKSIAATNAT----SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVIGGK 146
VH +I N S+ DGE+V FD+VEG KG EA NVTGP G +V G K
Sbjct: 60 VHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSK 111
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +3
Query: 39 SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVIGGK 146
S+ DGE V FD+VEG KG EA NVTGP G V G K
Sbjct: 80 SVGDGETVEFDVVEGEKGAEAANVTGPEGVPVQGSK 115
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +3
Query: 39 SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVIGGK 146
S+ DGE V FD+VEG KG EA NVTGP G V G K
Sbjct: 100 SVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK 135
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +3
Query: 39 SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVIGGK 146
S+ DGE V FD+VEG KG EA NVTGP G V G K
Sbjct: 102 SVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK 137
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +3
Query: 39 SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVIGGK 146
S+ DGE V FD+VEG KG EA NVTGP G V G K
Sbjct: 99 SVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK 134
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 46.6 bits (109), Expect = 2e-05
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +3
Query: 39 SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVIGGK 146
S+ DGE V FD+VEG KG EA NVTGP+G V G +
Sbjct: 126 SVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSR 161
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 46.6 bits (109), Expect = 2e-05
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +3
Query: 39 SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVIGGK 146
S+ DGE V FD+VEG KG EA NVTGP+G V G +
Sbjct: 134 SVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSR 169
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 46.6 bits (109), Expect = 2e-05
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +3
Query: 39 SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVIGGK 146
S+ DGE V FD+VEG KG EA NVTGP+G V G +
Sbjct: 126 SVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSR 161
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 46.2 bits (108), Expect = 3e-05
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = +3
Query: 39 SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVIGGK 146
S+ DGE V FD+VEG KG EA NVTGP G V G +
Sbjct: 85 SVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSR 120
>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(Contrin) (MSY2 homolog)
Length = 364
Score = 46.2 bits (108), Expect = 3e-05
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = +3
Query: 39 SLADGEEVLFDIVEGAKGLEARNVTGPNGGDVIGGK 146
S+ DGE V FD+VEG KG EA NVTGP G V G +
Sbjct: 137 SVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSR 172
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,916,976
Number of Sequences: 369166
Number of extensions: 360977
Number of successful extensions: 1270
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)